Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0764 ATGGAGATCTTACAGGCGCTCGATGCTCAAGTTCTCATTGGTTTAGCAGCGGCCCTGCTAGCCATTGTTGCTGGTGCTGTTGTCCTCTTTTCCTCCAGAAAACCCGCCTCTAGAGGTACCATCCCCACTTCTGATTTGATTCTTGGAAATGAAAATTTTAGAGCTCGTTTGTTACACTTTAGGTACATTCCTATCATAAACTTTGTGGCCCAAAACACCTTGGCTAGGCATACTTCTTTAGAGCTGCCTGACTCCTGTGCCTGCTTGGATCCTGAGAACTTTAAGGAGTTTAAACTTGTTAAGCGTACAAAGCTGAGCCATAATGTGGCGAAGTTCACTTTTATTCTTCCGATGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACCCCAACTACTTTGGACTCTGATGTTGGATACTTTGAACTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCACATCATTTTCGAGAAATGCGTGTTGGGGATTATCTTGCTGTAAAGGGACCAAAGGGACGTTTTAAGTATCAACCCGGTCAAGTTAGGGCATTGGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTACTCGTGCTATATTAGAGAACCCGAACGACAAGACAAAGATTCACCTTATTTACGCCAATGTTACACTTGAAGATATTCTTTTGAAGGAGGAATTGGATCTTCTTGCCCGTAGATACCCCGATCGCTTCAAGATCTACTACGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGTGGCGTTGGCTTTGTAACCAAGGAAATGATTCAAGCGCATTGCCCTGCACTTGCCGCTGACATTCAGATTCTACGATGCGGTCCGCCACCGATGAACAAGGCCATGGCTGCGCACCTTGATGAACTCGGCTATACACCTGAAATGCAGTTTCAATTCTAA 987 44.88 MEILQALDAQVLIGLAAALLAIVAGAVVLFSSRKPASRGTIPTSDLILGNENFRARLLHFRYIPIINFVAQNTLARHTSLELPDSCACLDPENFKEFKLVKRTKLSHNVAKFTFILPMPDSILGLPIGQHLSCRGKDSQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFKYQPGQVRALGMLAGGSGITPMYQVTRAILENPNDKTKIHLIYANVTLEDILLKEELDLLARRYPDRFKIYYVLNQPPEVWDGGVGFVTKEMIQAHCPALAADIQILRCGPPPMNKAMAAHLDELGYTPEMQFQF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11200692 11204574 - Maker00010438 Lcy5g0764 632579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0764 328 SUPERFAMILY Riboflavin synthase domain-like 89 197 IPR017938 -
Lcy5g0764 328 Pfam Oxidoreductase NAD-binding domain 205 311 IPR001433 GO:0016491(InterPro)
Lcy5g0764 328 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 184 324 IPR039261 -
Lcy5g0764 328 PANTHER NADH-CYTOCHROME B5 REDUCTASE 54 328 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Lcy5g0764 328 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 242 253 IPR001709 GO:0016491(InterPro)
Lcy5g0764 328 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 298 306 IPR001709 GO:0016491(InterPro)
Lcy5g0764 328 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 204 223 IPR001709 GO:0016491(InterPro)
Lcy5g0764 328 Gene3D Translation factors 84 186 - -
Lcy5g0764 328 CDD cyt_b5_reduct_like 97 328 - -
Lcy5g0764 328 FunFam NADH-cytochrome b5 reductase 186 328 - -
Lcy5g0764 328 FunFam NADH-cytochrome b5 reductase 87 186 - -
Lcy5g0764 328 PRINTS Cytochrome B5 reductase signature 123 134 - -
Lcy5g0764 328 PRINTS Cytochrome B5 reductase signature 204 223 - -
Lcy5g0764 328 PRINTS Cytochrome B5 reductase signature 181 195 - -
Lcy5g0764 328 PRINTS Cytochrome B5 reductase signature 298 306 - -
Lcy5g0764 328 PRINTS Cytochrome B5 reductase signature 242 253 - -
Lcy5g0764 328 PRINTS Cytochrome B5 reductase signature 145 152 - -
Lcy5g0764 328 Pfam Oxidoreductase FAD-binding domain 97 195 IPR008333 -
Lcy5g0764 328 Gene3D - 187 328 IPR039261 -
Lcy5g0764 328 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 92 196 IPR017927 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0764 K00326 - - csv:101212931 479.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1184 Lcy-Chr10:34451068 Lcy5g0764 Lcy-Chr5:11200692 8.27E-50 dispersed
Lcy5g0764 Lcy-Chr5:11200692 Lcy9g1590 Lcy-Chr9:41108148 1.10E-50 dispersed
Lcy4g2124 Lcy-Chr4:47774141 Lcy5g0764 Lcy-Chr5:11200692 9.10E-61 transposed
Lcy8g2198 Lcy-Chr8:48074655 Lcy5g0764 Lcy-Chr5:11200692 1.04E-126 transposed
Lcy1g1745 Lcy-Chr1:18443871 Lcy5g0764 Lcy-Chr5:11200692 3.21E-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86