Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0800 ATGAGGGAAGATGATTCAAATTGGTTTTCAAAATGGGAACAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATTACCCCTGATCTTGCTTTGGCATTTGACATCAGAAACCCAAATAATTCCATCAACAACAGCCACCCACCTCCGCCGCCGCCGCCGCCTCCTCCGGTTCCTGCCCAGCCGACTTCAGCCGATTTTGGGGACTCCGCCGATTTGGGGTCCGGAGCCGGCGCCGGGGACGAACCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGCTTATGAGCGTCGATGGCTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGCGGCGGCGGAGCTAGCGGCGGCGCGGGATTGGCTTCAGCCGCTTCGGATCCCGCCACTGACCATTTGTTCGCTAGTTCCCCTGTTCCGCCGCATTTTCTCCACTCTGCTCGGGCGAATTCCGACCATTTCTTACCGTTTGTGCCTGTCGGAGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCCGCCGCTCAGTACCATCGGCAAGTGGCCCATTTTGGGTCGCCGCCGAATGGGCAGTTTGAGCATCCGTTTATGGCTCGGCCTGTTCACCGGATTGGGGCTCCGGTGAATACTCCGGCAACGAATTACGGCGAGGATTTGGATTCCGGTATTGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGGAATGATTAA 861 57.03 MREDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDIRNPNNSINNSHPPPPPPPPPPVPAQPTSADFGDSADLGSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASGGAGLASAASDPATDHLFASSPVPPHFLHSARANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFMARPVHRIGAPVNTPATNYGEDLDSGIGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12320914 12321774 - Maker00010513 Lcy5g0800 632615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0800 286 MobiDBLite consensus disorder prediction 48 66 - -
Lcy5g0800 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 149 IPR017930 -
Lcy5g0800 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677(InterPro)
Lcy5g0800 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 225 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0800 286 MobiDBLite consensus disorder prediction 1 23 - -
Lcy5g0800 286 FunFam Two-component response regulator 89 152 - -
Lcy5g0800 286 Pfam Myb-like DNA-binding domain 96 145 IPR001005 -
Lcy5g0800 286 SUPERFAMILY Homeodomain-like 90 150 IPR009057 -
Lcy5g0800 286 MobiDBLite consensus disorder prediction 40 92 - -
Lcy5g0800 286 Gene3D - 90 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0800 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0162 Lcy-Chr11:1769507 Lcy5g0800 Lcy-Chr5:12320914 2.42E-42 dispersed
Lcy5g0800 Lcy-Chr5:12320914 Lcy6g0193 Lcy-Chr6:1759863 3.90E-18 dispersed
Lcy1g1774 Lcy-Chr1:18927251 Lcy5g0800 Lcy-Chr5:12320914 3.04E-136 wgd
Lcy10g0975 Lcy-Chr10:31313088 Lcy5g0800 Lcy-Chr5:12320914 5.02E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20097 None None None None Lcy TF