Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0800 | ATGAGGGAAGATGATTCAAATTGGTTTTCAAAATGGGAACAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATTACCCCTGATCTTGCTTTGGCATTTGACATCAGAAACCCAAATAATTCCATCAACAACAGCCACCCACCTCCGCCGCCGCCGCCGCCTCCTCCGGTTCCTGCCCAGCCGACTTCAGCCGATTTTGGGGACTCCGCCGATTTGGGGTCCGGAGCCGGCGCCGGGGACGAACCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGCTTATGAGCGTCGATGGCTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGCGGCGGCGGAGCTAGCGGCGGCGCGGGATTGGCTTCAGCCGCTTCGGATCCCGCCACTGACCATTTGTTCGCTAGTTCCCCTGTTCCGCCGCATTTTCTCCACTCTGCTCGGGCGAATTCCGACCATTTCTTACCGTTTGTGCCTGTCGGAGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCCGCCGCTCAGTACCATCGGCAAGTGGCCCATTTTGGGTCGCCGCCGAATGGGCAGTTTGAGCATCCGTTTATGGCTCGGCCTGTTCACCGGATTGGGGCTCCGGTGAATACTCCGGCAACGAATTACGGCGAGGATTTGGATTCCGGTATTGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGGAATGATTAA | 861 | 57.03 | MREDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDIRNPNNSINNSHPPPPPPPPPPVPAQPTSADFGDSADLGSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASGGAGLASAASDPATDHLFASSPVPPHFLHSARANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFMARPVHRIGAPVNTPATNYGEDLDSGIGTGGRKVLTLFPTGND | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12320914 | 12321774 | - | Maker00010513 | Lcy5g0800 | 632615 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0800 | 286 | MobiDBLite | consensus disorder prediction | 48 | 66 | - | - | |
Lcy5g0800 | 286 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 98 | 149 | IPR017930 | - | |
Lcy5g0800 | 286 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 94 | 146 | IPR006447 | GO:0003677(InterPro) | |
Lcy5g0800 | 286 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 4 | 225 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0800 | 286 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lcy5g0800 | 286 | FunFam | Two-component response regulator | 89 | 152 | - | - | |
Lcy5g0800 | 286 | Pfam | Myb-like DNA-binding domain | 96 | 145 | IPR001005 | - | |
Lcy5g0800 | 286 | SUPERFAMILY | Homeodomain-like | 90 | 150 | IPR009057 | - | |
Lcy5g0800 | 286 | MobiDBLite | consensus disorder prediction | 40 | 92 | - | - | |
Lcy5g0800 | 286 | Gene3D | - | 90 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0162 | Lcy-Chr11:1769507 | Lcy5g0800 | Lcy-Chr5:12320914 | 2.42E-42 | dispersed | |
Lcy5g0800 | Lcy-Chr5:12320914 | Lcy6g0193 | Lcy-Chr6:1759863 | 3.90E-18 | dispersed | |
Lcy1g1774 | Lcy-Chr1:18927251 | Lcy5g0800 | Lcy-Chr5:12320914 | 3.04E-136 | wgd | |
Lcy10g0975 | Lcy-Chr10:31313088 | Lcy5g0800 | Lcy-Chr5:12320914 | 5.02E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20097 | None | None | None | None | Lcy | TF |
Pathway information
