Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0800 ATGAGGGAAGATGATTCAAATTGGTTTTCAAAATGGGAACAGGAGCTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATTACCCCTGATCTTGCTTTGGCATTTGACATCAGAAACCCAAATAATTCCATCAACAACAGCCACCCACCTCCGCCGCCGCCGCCGCCTCCTCCGGTTCCTGCCCAGCCGACTTCAGCCGATTTTGGGGACTCCGCCGATTTGGGGTCCGGAGCCGGCGCCGGGGACGAACCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGCTTATGAGCGTCGATGGCTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGCGGCGGCGGAGCTAGCGGCGGCGCGGGATTGGCTTCAGCCGCTTCGGATCCCGCCACTGACCATTTGTTCGCTAGTTCCCCTGTTCCGCCGCATTTTCTCCACTCTGCTCGGGCGAATTCCGACCATTTCTTACCGTTTGTGCCTGTCGGAGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCCGCCGCTCAGTACCATCGGCAAGTGGCCCATTTTGGGTCGCCGCCGAATGGGCAGTTTGAGCATCCGTTTATGGCTCGGCCTGTTCACCGGATTGGGGCTCCGGTGAATACTCCGGCAACGAATTACGGCGAGGATTTGGATTCCGGTATTGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGGAATGATTAA 861 57.03 MREDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDIRNPNNSINNSHPPPPPPPPPPVPAQPTSADFGDSADLGSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASGGAGLASAASDPATDHLFASSPVPPHFLHSARANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFMARPVHRIGAPVNTPATNYGEDLDSGIGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12320914 12321774 - Maker00010513 Lcy5g0800 632615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0800 286 MobiDBLite consensus disorder prediction 48 66 - -
Lcy5g0800 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 149 IPR017930 -
Lcy5g0800 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677(InterPro)
Lcy5g0800 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 225 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0800 286 MobiDBLite consensus disorder prediction 1 23 - -
Lcy5g0800 286 FunFam Two-component response regulator 89 152 - -
Lcy5g0800 286 Pfam Myb-like DNA-binding domain 96 145 IPR001005 -
Lcy5g0800 286 SUPERFAMILY Homeodomain-like 90 150 IPR009057 -
Lcy5g0800 286 MobiDBLite consensus disorder prediction 40 92 - -
Lcy5g0800 286 Gene3D - 90 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0162 Lcy-Chr11:1769507 Lcy5g0800 Lcy-Chr5:12320914 2.42E-42 dispersed
Lcy5g0800 Lcy-Chr5:12320914 Lcy6g0193 Lcy-Chr6:1759863 3.90E-18 dispersed
Lcy1g1774 Lcy-Chr1:18927251 Lcy5g0800 Lcy-Chr5:12320914 3.04E-136 wgd
Lcy10g0975 Lcy-Chr10:31313088 Lcy5g0800 Lcy-Chr5:12320914 5.02E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20097 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0800 - - - 0.0