Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0812 ATGGATATCTCTGCAACAACGCTCTTTTTCCTCACTTTTCTCTCTCTTTCCCTTTACCTTCTCTTCTTCACTTCACAAAAGAAATCCAAAACCCACCAAGGATTCAAACACTTCCCCATACTGGGAACCTTGCCGCTCTTCTTATTGAACCGACACCGTTTTCTCGACTGGTCGACGGAGGTTCTCAGCAGCTGCCCGACCAACACGGCGGTCTTCAAGCGTCCGGGGAAGGTCCACGGCGTCATCACGGCCAACCCACTTGTGGTCGAGCACATATTGAAGACCCAGTTCGAGAACTACCCGAAAGGGGAACGTTTCATTTCGCTTTTGGAGGATTTTTTGGGGCGTGGAATCTTCAACTCCGACGGCGAAATTTGGAGGGTTCAGAGGAAAACGGCCAGTTATGAGTTCAATACGAAATCGCTTAGGAATTTTGTAATGGAGAATGTTAGGGTCGAGATTCAGACGAGGTTGTTGCCTATTTTGGGAAAGGCTTCTGAAACGGAGCGGATTTTGGATCTGCAGGACGTTTTGGAGCGATTTGCGTTTGATAATGTTTGTAAATTGGCTTTTGATTTCGACCCTGGCTGTCTCGGCGGCGATGGCACTGCCGGCGCCGAGTTCATGCGTGCTTTTGAGGACGCCGCTACTCTCAGCTCCGGCAGATTCATGTATGCTTTCCCGGGTTTGTACAAAGTGAAGAAAATTTTGAACATCGGATCAGAGAGAACCCTGAAGGAATCCATAGCCACAGTCCACAAATTTGCAGAAGACATCATACGCTCAAGAATGGAAGAGAAGAAGACAACCCACATCAAAAATGATCAAGATTTATTATCCCGCTTCATGGGAGACGAAGACTATAATTCCCCAGAATTCCTCAGAGACATAATCATAAGCTTCATCCTCGCCGGCCGAGACACCACATCTTCCGCTCTAACATGGTTCTTCTGGATCTTATCCTCCCGACCACACATCCAACAAAAAATCCTCACAGAACTCGAAACGATCCGGTCGAGAACCAGCAAGCAAATCGGAGAAACGTACAGCTTCGACGAACTCCGGGACATGCACTATCTACAAGCAGCACTATCCGAGACTCTCCGGCTGTACCCGCCGGTTCCGGTGGACACAAAAGCCTGCCGAAACGACGACGTCTTACCGGACGGGACGTTTATTGGGAAGAGTTGGTTTGTGACGTACCATACATATGCAATGGGGAGAATGGAGAGCATATGGGGGAAGAATTATGGGGAATTTTTGCCGGAGAGGTGGCTGGAAAATGGGGTTTGTAGGACAGAGAGCCCGTTTCGGTTCCCGGTATTTCACGCGGGACCGAGAATGTGTTTGGGAAAGGACATGGCTTATATTCAAATGAAGTCCATAGCTGCGGCTGTGATGGAGAGGTTTGAGGTGGGAATGGCAGAGAAGGAGAAGAGTCCAAAGCATTTGTTGTCGCTGACGTTGAGGATGGAAAATGGACTGCAGGTGATTGTGAAAAAGAGAGACACGAGTGTGACCATTTGA 1527 48.66 MDISATTLFFLTFLSLSLYLLFFTSQKKSKTHQGFKHFPILGTLPLFLLNRHRFLDWSTEVLSSCPTNTAVFKRPGKVHGVITANPLVVEHILKTQFENYPKGERFISLLEDFLGRGIFNSDGEIWRVQRKTASYEFNTKSLRNFVMENVRVEIQTRLLPILGKASETERILDLQDVLERFAFDNVCKLAFDFDPGCLGGDGTAGAEFMRAFEDAATLSSGRFMYAFPGLYKVKKILNIGSERTLKESIATVHKFAEDIIRSRMEEKKTTHIKNDQDLLSRFMGDEDYNSPEFLRDIIISFILAGRDTTSSALTWFFWILSSRPHIQQKILTELETIRSRTSKQIGETYSFDELRDMHYLQAALSETLRLYPPVPVDTKACRNDDVLPDGTFIGKSWFVTYHTYAMGRMESIWGKNYGEFLPERWLENGVCRTESPFRFPVFHAGPRMCLGKDMAYIQMKSIAAAVMERFEVGMAEKEKSPKHLLSLTLRMENGLQVIVKKRDTSVTI 508
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 12554633 12557334 - Maker00010521 Lcy5g0812 632627
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0812 508 FunFam Cytochrome P450 26 505 - -
Lcy5g0812 508 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 CDD CYP86A 69 495 - -
Lcy5g0812 508 SUPERFAMILY Cytochrome P450 25 502 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 Pfam Cytochrome P450 75 485 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PANTHER CYTOCHROME P450 19 495 - -
Lcy5g0812 508 Gene3D Cytochrome P450 18 507 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy5g0812 508 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0812 508 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0066 Lcy-Chr2:478628 Lcy5g0812 Lcy-Chr5:12554633 6.08E-139 dispersed
Lcy3g1870 Lcy-Chr3:45893797 Lcy5g0812 Lcy-Chr5:12554633 7.23E-122 dispersed
Lcy5g0396 Lcy-Chr5:4164865 Lcy5g0812 Lcy-Chr5:12554633 2.31E-126 dispersed
Lcy5g0812 Lcy-Chr5:12554633 Lcy5g0815 Lcy-Chr5:12712224 9.65e-314 dispersed
Lcy5g0812 Lcy-Chr5:12554633 Lcy5g0814 Lcy-Chr5:12666315 1.95e-311 proximal
Lcy12g0002 Lcy-Chr12:29970 Lcy5g0812 Lcy-Chr5:12554633 0 transposed
Lcy13g1061 Lcy-Chr13:23713799 Lcy5g0812 Lcy-Chr5:12554633 3.26E-103 wgd
Lcy13g0700 Lcy-Chr13:10104949 Lcy5g0812 Lcy-Chr5:12554633 3.85E-115 wgd
Lcy5g0812 Lcy-Chr5:12554633 Lcy5g1143 Lcy-Chr5:24565175 4.56e-312 wgd
Lcy5g0812 Lcy-Chr5:12554633 Lcy5g1119 Lcy-Chr5:23354334 5.86E-129 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0812 - - - 0.0