Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0821 ATGGGATTCATGGAATGCCTTGCCCATTTCTTTCATAATGCAAACCCTTACATCGCAGTCATCTCCCTCCAATTCGGCTACGCCGGAATGAATATCATCTCTACTGTCTCCCTCAACCGCGGTATGAGCCACTACGTCCTCGTCGTCTACCGCCATGCCTTCGCCACCGCTGTCATGGCTCCCTTTGCTCTTGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATTTAAGATTTTTGTTCAGATGTTTGTTCTTGCTCTTCTTGGGCCATTGATCGATCAGAACTTCTACTATGTGGGGTTGAAAATGACATCTCCAACTTTCTCCTGCGCCATAAGCAACATGCTTCCTTCAATGACATTTGTCATGGCAGTTCTTTGCAGGATGGAGAAGTTAGACTTGAGAAAAGTGAGATGCCAAGCCAAGTTGTTTGGAACAGTAGTGACGGTTGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTGGACCGGGCACGGCGGCCACCCGAACTCACCACCCACGGCAGATGCGGCGGCGCTCAACCACCACAATGACGGAGAGTTCATCAAAGGCTCCATTTTGCTCATCATCGCCACTTTGGCTTGGGCTGCCTTCTTCATCCTCCAAGTCATAACCTTGAGAAAATACACAGCCCATCTTTCGCTAACCACCATGGTTTGCTTTCTGGGAACCCTTCAGGCCATTGTTGTCACCTTCGCCATGGAACACCGCCCCTCCGCCTGGGCCATTGGCTGGGACCTGAACCTTCTCGCCGCCGCTTATGCGGGGATTGTGACCTCAGGGGTGGCGTATTATGTGCAAGGATTGGTTATGAAGACCAAAGGGCCAGTTTTCGTTACAGCTTTTAGTCCTCTGATGATGGTGATTGTTGCTTTCATGGGCTCTCTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGCTGATTGTAATAGGGCTTTACTCTGTTTTGTGGGGAAAGTACAAGGAAAGCAAAGAGAAGGAAAGTGGAGAGATTATTGAAGTAGTGAAAGGTGGAGAATTGCCTGTAATAAATGAAGGCATTGAAGCAATTCAAAATAAAGATGCTTTGGCCATTAGTATTCCTCCCATGGCTGCAACTAACATGGAGAAGAAGCTTCAAGGCACTAACCAGCCAAATTAA 1194 47.4 MGFMECLAHFFHNANPYIAVISLQFGYAGMNIISTVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITFKIFVQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVLCRMEKLDLRKVRCQAKLFGTVVTVVGAMLMTFYKGSVINFFWTGHGGHPNSPPTADAAALNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTMVCFLGTLQAIVVTFAMEHRPSAWAIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKESGEIIEVVKGGELPVINEGIEAIQNKDALAISIPPMAATNMEKKLQGTNQPN 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12921925 12925630 + Maker00010542 Lcy5g0821 632636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0821 397 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020(InterPro)
Lcy5g0821 397 Pfam EamA-like transporter family 20 157 IPR000620 GO:0016020(InterPro)
Lcy5g0821 397 PANTHER WAT1-RELATED PROTEIN 18 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy5g0821 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Lcy5g0821 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1214 Lcy-Chr10:34795201 Lcy5g0821 Lcy-Chr5:12921925 2.09E-113 dispersed
Lcy5g0821 Lcy-Chr5:12921925 Lcy7g0734 Lcy-Chr7:7054917 6.68E-157 dispersed
Lcy5g0821 Lcy-Chr5:12921925 Lcy5g0823 Lcy-Chr5:12972034 7.78E-248 proximal
Lcy13g0364 Lcy-Chr13:4047832 Lcy5g0821 Lcy-Chr5:12921925 5.35E-82 transposed
Lcy1g1770 Lcy-Chr1:18852906 Lcy5g0821 Lcy-Chr5:12921925 1.87E-154 transposed
Lcy10g0790 Lcy-Chr10:23944251 Lcy5g0821 Lcy-Chr5:12921925 1.30E-64 wgd
Lcy5g0821 Lcy-Chr5:12921925 Lcy8g0224 Lcy-Chr8:5825163 1.32E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0821 - - - 0.0