Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0825 ATGGGTAACTCAAATTCAAAGTCTAAAGAGTATGGGTTCAAACGAAAGCTTACCAAACGACACCGAAAGGAGCTGGAAATTGCGTGGGTCTCACACCGGAGTGAGTTCAACGCACAAAATCCCGTGGGTCACGTCGAAACTCACGAATTTCTTGCGTACAAGTGTTGGAACCGCACGGATCTTGGTGCCGAAGAGGAAAGAACGCAATGGAGAGAGAGACGACTACGACAACGACGTGGGCTTCACAAATCGACCTCTAAAAACCAGAAACTCGTGGGTCTCTTGCTGCCCAGGCTGAAAAGAGAGGCGAAGAAGAGAGAAAGGGATGGCGGCGCGAGCTCTTGCTTCAACGGAAGGAGATGGCGCACGGGATCAAGCGGCAACGACACGAGTGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGTACTGAGGCACAGGATCTGGAATTCGGCTGGTCTGCTCCTCTTCCCAACAACATTACTGATTGCTGCACTTTCTCTTTGGAGTATGTCTGTCTAAAGAAGCCATTCGATTCTGACATGGAGTTTGACATGAAGTTAGAGGAGATCAGCAAGAAAATGAGAGAGTTACTAAATGTCTTCAGCGACGCAACAACGAAGTTGGAGCGGAGTGTTGGAGAAATGAAGCGAAATTTTGAAGAATTTATAGAAGAGTTTTCAGCAATAAAGAGAGAGTTTAGATTGACCAAGGAAAAGAGACAGAAATCGAGAAATCGATACAGGGCAAGAAGAAAAGCAAAGTTGTCGGAGATTTCAATGAATAACAAGAAATCGATCAGAAACGATGAAGAAAGAAAAGCATCGATTCTGGCCATGGAGTGGGATCGTGGGTTGGATCGTGTGTTGGAGTTAGTGTTGAAGTTACAACAGTCATTGATCAAACAAGAAGAGGAGTGGAAAGCATTTCGGCAAGAGCTCGAGGAATCACAAAAGAAACGGGAGGAAATGCAGACGGAAAAAGAACAAAAACAAAAGAAGGAAGAGGAGGAAGCAGTGAAGAGGAGAGAGTGCAATACGATGGGAGCAAAAAAAGTTAATCGGAAGCAAAGTAGAAGAGTTGCGGGAAGACGTCGAGCGTACGCATCAAGACTTCGGAAAACGCGAGGAAAAACCATCGGAGGACTTCCAAAAAGGTTCTCGAGCACAGAATCCTTGGGCACATACAAGAACTATCGATCAAAGGCGGGATGGTCAGGGCAAAGGTCGTGTAGACAACGTCGAGGTTGTAAGACGAAGCTAGAAGGGCAATCGAGGAGGAAGGAGGTCAGAGCAAAACGAAAGAGGGAGAAAACTAGAACGCGAAAACGAGGAACGAATGAAACCGAGAATCCAAAGGTTGGAAAGAGACTCGACCAAACCGGAACCGTCATTTTAATGAGAAATCGTTCGATGAAGATGCCGTGGGAAGAAGTGAAGTCATGGAGGGGGCGACTCTTCGACAATGGGGGAGCTCGAAGGAGGAACGATAGTGAAGAAAATGGAGAAAAGAAGACTCGAACGATAGCGGGAAGCCATGCCCGACGGCGAGGATTGGCCATCACCGGCGGCACCTTCTGGTTTGGGCGGATAAGTATTCTTCGAGGCATCAACTTAAGCGTTGAGGAGGGGTGGTGGAAGGAATCGAGAGGGACGGCGGCGAAGAGACCTCTGATGGAAGCCATTACCGGCGGCGAAGGCGAGCGGTGTCGGAGAGGAAGCCGCGAAGAAGACGTCGATGGAAAGGGCGTGTGCTGGAGGGGAATAATGCGATGGGTCACGTGGAGCATTCTTGCCGCTGCACTTCACCAACAACCGCTGCCTATAGAGCCACAACCCGCCGTCGCCTGCAGCATAACCAACGACCGCCGCCACCGCCACCGCCACCAATCGCCGTCGGCCAAGGCACTGCCGACCAATCCAGCTCATCACCACCTCCGAAACGGGTCATTGGAGCGTTGGCCACCTAGGGCCCATACTGTACTGGAAATGAATTATACAGAGCAGTTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTGGTGACGAGTCTGGAACACCAACAAGGTTGTTGTCACTTATACGGAGGTGCTGGGATGCAAGTCCTAAAAACAGACCATCTTTTTCTGATATAGTTATGAACTTGGAGTCAATTTGGGAGGACAGAAAAGGTTTAGAGTCTATCACCCCTATACACCCTGATTTGTGTGGCAGACTTGGTAGTGATGCTAATGAAAATGATTATGCGTACCGAGAAGATATTGATTGGTCAAAACAGGGGGAACATTTTTATCAAAAGGTTTCTGATGCAGATAGGTGTGCTGTGAATTTCTGGCTTGATTCCTCAACTGATCATTTGGAATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACCTGTGGGAGGAGAGAGACCATGGAGGATTCTCATTTCCTTTTGCCTCACCTGTGCGATGTAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTTTGATATTTTTGGCCAGGGAGAAAGGAAAACTGAATTCATCAACTTTGTGCTGTCATATGTTTAAAGAGATGGAGAAGCCTGGAGGCGCATGTCTAGGTGCACCTTCACTGACCTTGCATTCTGTTACTTTCTTCCCAATTACTAATTGCTTCAACATTTTACAAGTGTGTCAAATACCTAATGCTACAGTTTTAAGACATGCAGGTTCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAAGATTATGTTCCACAAGAAGTCCTGCGGATGCATTAATGGAAGCATTTGTAAAAACAGATATTGAGTTTAGAAAAGAACTTGAATTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGGGACAAGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGCGATCCCATTGTTTTAAGCAAGGATCATGTTGCTAGTTGTCTCGAGGAGCGAGAGCGTGTCATCAGTGCTGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCAGCCGCTCTTCAGGTGACTCGATCAATTGGCGACGATGATTTGAAGCCAGCGGTGACTGCAGAACCCGAGATAAGAGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGACTATGGGATGTCCTCAGCAACTCTGAGGTAGTTGGGATAATCAGGGACACTGTCAAAGAACCAGGGATGTGCTCGAAACGGCTAGCAACGGAAGCTGCAGCTCGGGGCAGTAATGATAACATCACAGTAATTGTTGTATTTTTGCATCCAGTATCTACAGTAGAGAGAATTTATTAA 3408 47.15 MGNSNSKSKEYGFKRKLTKRHRKELEIAWVSHRSEFNAQNPVGHVETHEFLAYKCWNRTDLGAEEERTQWRERRLRQRRGLHKSTSKNQKLVGLLLPRLKREAKKRERDGGASSCFNGRRWRTGSSGNDTSELLTGVVPYTDLRTEAQDLEFGWSAPLPNNITDCCTFSLEYVCLKKPFDSDMEFDMKLEEISKKMRELLNVFSDATTKLERSVGEMKRNFEEFIEEFSAIKREFRLTKEKRQKSRNRYRARRKAKLSEISMNNKKSIRNDEERKASILAMEWDRGLDRVLELVLKLQQSLIKQEEEWKAFRQELEESQKKREEMQTEKEQKQKKEEEEAVKRRECNTMGAKKVNRKQSRRVAGRRRAYASRLRKTRGKTIGGLPKRFSSTESLGTYKNYRSKAGWSGQRSCRQRRGCKTKLEGQSRRKEVRAKRKREKTRTRKRGTNETENPKVGKRLDQTGTVILMRNRSMKMPWEEVKSWRGRLFDNGGARRRNDSEENGEKKTRTIAGSHARRRGLAITGGTFWFGRISILRGINLSVEEGWWKESRGTAAKRPLMEAITGGEGERCRRGSREEDVDGKGVCWRGIMRWVTWSILAAALHQQPLPIEPQPAVACSITNDRRHRHRHQSPSAKALPTNPAHHHLRNGSLERWPPRAHTVLEMNYTEQLLTAAIVSDGLRPALPGDESGTPTRLLSLIRRCWDASPKNRPSFSDIVMNLESIWEDRKGLESITPIHPDLCGRLGSDANENDYAYREDIDWSKQGEHFYQKVSDADRCAVNFWLDSSTDHLEYRPILSWGSFSTCGRRETMEDSHFLLPHLCDVEDIHVFGIFDGHRGLIFLAREKGKLNSSTLCCHMFKEMEKPGGACLGAPSLTLHSVTFFPITNCFNILQVCQIPNATVLRHAGSAAAEFSAQAIPGFLQRLCSTRSPADALMEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALIVRDKLFVANAGDCRTILCRAGDPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEIRETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKEPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13058564 13079723 - Maker00010492 Lcy5g0825 632640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0825 1135 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 901 1129 - -
Lcy5g0825 1135 CDD PP2Cc 801 1125 IPR001932 -
Lcy5g0825 1135 Gene3D - 786 865 IPR036457 -
Lcy5g0825 1135 ProSiteProfiles PPM-type phosphatase domain profile. 799 1125 IPR001932 -
Lcy5g0825 1135 Gene3D Transferase(Phosphotransferase) domain 1 659 735 - -
Lcy5g0825 1135 MobiDBLite consensus disorder prediction 354 374 - -
Lcy5g0825 1135 MobiDBLite consensus disorder prediction 103 123 - -
Lcy5g0825 1135 PANTHER PROTEIN PHOSPHATASE 786 1124 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy5g0825 1135 SUPERFAMILY PP2C-like 906 1127 IPR036457 -
Lcy5g0825 1135 Coils Coil 287 345 - -
Lcy5g0825 1135 SMART PP2C_SIG_2 884 1125 IPR001932 -
Lcy5g0825 1135 MobiDBLite consensus disorder prediction 321 351 - -
Lcy5g0825 1135 MobiDBLite consensus disorder prediction 629 651 - -
Lcy5g0825 1135 MobiDBLite consensus disorder prediction 321 391 - -
Lcy5g0825 1135 SUPERFAMILY PP2C-like 792 840 IPR036457 -
Lcy5g0825 1135 SMART PP2C_4 789 1123 IPR001932 -
Lcy5g0825 1135 Gene3D - 906 1130 IPR036457 -
Lcy5g0825 1135 MobiDBLite consensus disorder prediction 403 457 - -
Lcy5g0825 1135 Pfam Protein phosphatase 2C 903 1118 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0825 Lcy-Chr5:13058564 Lcy6g0090 Lcy-Chr6:846158 8.48E-33 dispersed
Lcy12g2231 Lcy-Chr12:43569124 Lcy5g0825 Lcy-Chr5:13058564 1.71E-65 transposed
Lcy4g1753 Lcy-Chr4:43510900 Lcy5g0825 Lcy-Chr5:13058564 1.29E-06 transposed
Lcy4g2161 Lcy-Chr4:48177052 Lcy5g0825 Lcy-Chr5:13058564 8.81E-25 transposed
Lcy12g0857 Lcy-Chr12:11843620 Lcy5g0825 Lcy-Chr5:13058564 1.80E-06 wgd
Lcy12g0891 Lcy-Chr12:12724307 Lcy5g0825 Lcy-Chr5:13058564 1.99E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0825 - - - 0.0