Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0825 | ATGGGTAACTCAAATTCAAAGTCTAAAGAGTATGGGTTCAAACGAAAGCTTACCAAACGACACCGAAAGGAGCTGGAAATTGCGTGGGTCTCACACCGGAGTGAGTTCAACGCACAAAATCCCGTGGGTCACGTCGAAACTCACGAATTTCTTGCGTACAAGTGTTGGAACCGCACGGATCTTGGTGCCGAAGAGGAAAGAACGCAATGGAGAGAGAGACGACTACGACAACGACGTGGGCTTCACAAATCGACCTCTAAAAACCAGAAACTCGTGGGTCTCTTGCTGCCCAGGCTGAAAAGAGAGGCGAAGAAGAGAGAAAGGGATGGCGGCGCGAGCTCTTGCTTCAACGGAAGGAGATGGCGCACGGGATCAAGCGGCAACGACACGAGTGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGTACTGAGGCACAGGATCTGGAATTCGGCTGGTCTGCTCCTCTTCCCAACAACATTACTGATTGCTGCACTTTCTCTTTGGAGTATGTCTGTCTAAAGAAGCCATTCGATTCTGACATGGAGTTTGACATGAAGTTAGAGGAGATCAGCAAGAAAATGAGAGAGTTACTAAATGTCTTCAGCGACGCAACAACGAAGTTGGAGCGGAGTGTTGGAGAAATGAAGCGAAATTTTGAAGAATTTATAGAAGAGTTTTCAGCAATAAAGAGAGAGTTTAGATTGACCAAGGAAAAGAGACAGAAATCGAGAAATCGATACAGGGCAAGAAGAAAAGCAAAGTTGTCGGAGATTTCAATGAATAACAAGAAATCGATCAGAAACGATGAAGAAAGAAAAGCATCGATTCTGGCCATGGAGTGGGATCGTGGGTTGGATCGTGTGTTGGAGTTAGTGTTGAAGTTACAACAGTCATTGATCAAACAAGAAGAGGAGTGGAAAGCATTTCGGCAAGAGCTCGAGGAATCACAAAAGAAACGGGAGGAAATGCAGACGGAAAAAGAACAAAAACAAAAGAAGGAAGAGGAGGAAGCAGTGAAGAGGAGAGAGTGCAATACGATGGGAGCAAAAAAAGTTAATCGGAAGCAAAGTAGAAGAGTTGCGGGAAGACGTCGAGCGTACGCATCAAGACTTCGGAAAACGCGAGGAAAAACCATCGGAGGACTTCCAAAAAGGTTCTCGAGCACAGAATCCTTGGGCACATACAAGAACTATCGATCAAAGGCGGGATGGTCAGGGCAAAGGTCGTGTAGACAACGTCGAGGTTGTAAGACGAAGCTAGAAGGGCAATCGAGGAGGAAGGAGGTCAGAGCAAAACGAAAGAGGGAGAAAACTAGAACGCGAAAACGAGGAACGAATGAAACCGAGAATCCAAAGGTTGGAAAGAGACTCGACCAAACCGGAACCGTCATTTTAATGAGAAATCGTTCGATGAAGATGCCGTGGGAAGAAGTGAAGTCATGGAGGGGGCGACTCTTCGACAATGGGGGAGCTCGAAGGAGGAACGATAGTGAAGAAAATGGAGAAAAGAAGACTCGAACGATAGCGGGAAGCCATGCCCGACGGCGAGGATTGGCCATCACCGGCGGCACCTTCTGGTTTGGGCGGATAAGTATTCTTCGAGGCATCAACTTAAGCGTTGAGGAGGGGTGGTGGAAGGAATCGAGAGGGACGGCGGCGAAGAGACCTCTGATGGAAGCCATTACCGGCGGCGAAGGCGAGCGGTGTCGGAGAGGAAGCCGCGAAGAAGACGTCGATGGAAAGGGCGTGTGCTGGAGGGGAATAATGCGATGGGTCACGTGGAGCATTCTTGCCGCTGCACTTCACCAACAACCGCTGCCTATAGAGCCACAACCCGCCGTCGCCTGCAGCATAACCAACGACCGCCGCCACCGCCACCGCCACCAATCGCCGTCGGCCAAGGCACTGCCGACCAATCCAGCTCATCACCACCTCCGAAACGGGTCATTGGAGCGTTGGCCACCTAGGGCCCATACTGTACTGGAAATGAATTATACAGAGCAGTTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTGGTGACGAGTCTGGAACACCAACAAGGTTGTTGTCACTTATACGGAGGTGCTGGGATGCAAGTCCTAAAAACAGACCATCTTTTTCTGATATAGTTATGAACTTGGAGTCAATTTGGGAGGACAGAAAAGGTTTAGAGTCTATCACCCCTATACACCCTGATTTGTGTGGCAGACTTGGTAGTGATGCTAATGAAAATGATTATGCGTACCGAGAAGATATTGATTGGTCAAAACAGGGGGAACATTTTTATCAAAAGGTTTCTGATGCAGATAGGTGTGCTGTGAATTTCTGGCTTGATTCCTCAACTGATCATTTGGAATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACCTGTGGGAGGAGAGAGACCATGGAGGATTCTCATTTCCTTTTGCCTCACCTGTGCGATGTAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTTTGATATTTTTGGCCAGGGAGAAAGGAAAACTGAATTCATCAACTTTGTGCTGTCATATGTTTAAAGAGATGGAGAAGCCTGGAGGCGCATGTCTAGGTGCACCTTCACTGACCTTGCATTCTGTTACTTTCTTCCCAATTACTAATTGCTTCAACATTTTACAAGTGTGTCAAATACCTAATGCTACAGTTTTAAGACATGCAGGTTCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAAGATTATGTTCCACAAGAAGTCCTGCGGATGCATTAATGGAAGCATTTGTAAAAACAGATATTGAGTTTAGAAAAGAACTTGAATTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGGGACAAGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGCGATCCCATTGTTTTAAGCAAGGATCATGTTGCTAGTTGTCTCGAGGAGCGAGAGCGTGTCATCAGTGCTGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCAGCCGCTCTTCAGGTGACTCGATCAATTGGCGACGATGATTTGAAGCCAGCGGTGACTGCAGAACCCGAGATAAGAGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGACTATGGGATGTCCTCAGCAACTCTGAGGTAGTTGGGATAATCAGGGACACTGTCAAAGAACCAGGGATGTGCTCGAAACGGCTAGCAACGGAAGCTGCAGCTCGGGGCAGTAATGATAACATCACAGTAATTGTTGTATTTTTGCATCCAGTATCTACAGTAGAGAGAATTTATTAA | 3408 | 47.15 | MGNSNSKSKEYGFKRKLTKRHRKELEIAWVSHRSEFNAQNPVGHVETHEFLAYKCWNRTDLGAEEERTQWRERRLRQRRGLHKSTSKNQKLVGLLLPRLKREAKKRERDGGASSCFNGRRWRTGSSGNDTSELLTGVVPYTDLRTEAQDLEFGWSAPLPNNITDCCTFSLEYVCLKKPFDSDMEFDMKLEEISKKMRELLNVFSDATTKLERSVGEMKRNFEEFIEEFSAIKREFRLTKEKRQKSRNRYRARRKAKLSEISMNNKKSIRNDEERKASILAMEWDRGLDRVLELVLKLQQSLIKQEEEWKAFRQELEESQKKREEMQTEKEQKQKKEEEEAVKRRECNTMGAKKVNRKQSRRVAGRRRAYASRLRKTRGKTIGGLPKRFSSTESLGTYKNYRSKAGWSGQRSCRQRRGCKTKLEGQSRRKEVRAKRKREKTRTRKRGTNETENPKVGKRLDQTGTVILMRNRSMKMPWEEVKSWRGRLFDNGGARRRNDSEENGEKKTRTIAGSHARRRGLAITGGTFWFGRISILRGINLSVEEGWWKESRGTAAKRPLMEAITGGEGERCRRGSREEDVDGKGVCWRGIMRWVTWSILAAALHQQPLPIEPQPAVACSITNDRRHRHRHQSPSAKALPTNPAHHHLRNGSLERWPPRAHTVLEMNYTEQLLTAAIVSDGLRPALPGDESGTPTRLLSLIRRCWDASPKNRPSFSDIVMNLESIWEDRKGLESITPIHPDLCGRLGSDANENDYAYREDIDWSKQGEHFYQKVSDADRCAVNFWLDSSTDHLEYRPILSWGSFSTCGRRETMEDSHFLLPHLCDVEDIHVFGIFDGHRGLIFLAREKGKLNSSTLCCHMFKEMEKPGGACLGAPSLTLHSVTFFPITNCFNILQVCQIPNATVLRHAGSAAAEFSAQAIPGFLQRLCSTRSPADALMEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALIVRDKLFVANAGDCRTILCRAGDPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEIRETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKEPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY | 1135 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 13058564 | 13079723 | - | Maker00010492 | Lcy5g0825 | 632640 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0825 | 1135 | FunFam | Leucine rich repeat protein phosphatase 2c domain containing protein | 901 | 1129 | - | - | |
Lcy5g0825 | 1135 | CDD | PP2Cc | 801 | 1125 | IPR001932 | - | |
Lcy5g0825 | 1135 | Gene3D | - | 786 | 865 | IPR036457 | - | |
Lcy5g0825 | 1135 | ProSiteProfiles | PPM-type phosphatase domain profile. | 799 | 1125 | IPR001932 | - | |
Lcy5g0825 | 1135 | Gene3D | Transferase(Phosphotransferase) domain 1 | 659 | 735 | - | - | |
Lcy5g0825 | 1135 | MobiDBLite | consensus disorder prediction | 354 | 374 | - | - | |
Lcy5g0825 | 1135 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
Lcy5g0825 | 1135 | PANTHER | PROTEIN PHOSPHATASE | 786 | 1124 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lcy5g0825 | 1135 | SUPERFAMILY | PP2C-like | 906 | 1127 | IPR036457 | - | |
Lcy5g0825 | 1135 | Coils | Coil | 287 | 345 | - | - | |
Lcy5g0825 | 1135 | SMART | PP2C_SIG_2 | 884 | 1125 | IPR001932 | - | |
Lcy5g0825 | 1135 | MobiDBLite | consensus disorder prediction | 321 | 351 | - | - | |
Lcy5g0825 | 1135 | MobiDBLite | consensus disorder prediction | 629 | 651 | - | - | |
Lcy5g0825 | 1135 | MobiDBLite | consensus disorder prediction | 321 | 391 | - | - | |
Lcy5g0825 | 1135 | SUPERFAMILY | PP2C-like | 792 | 840 | IPR036457 | - | |
Lcy5g0825 | 1135 | SMART | PP2C_4 | 789 | 1123 | IPR001932 | - | |
Lcy5g0825 | 1135 | Gene3D | - | 906 | 1130 | IPR036457 | - | |
Lcy5g0825 | 1135 | MobiDBLite | consensus disorder prediction | 403 | 457 | - | - | |
Lcy5g0825 | 1135 | Pfam | Protein phosphatase 2C | 903 | 1118 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0825 | Lcy-Chr5:13058564 | Lcy6g0090 | Lcy-Chr6:846158 | 8.48E-33 | dispersed | |
Lcy12g2231 | Lcy-Chr12:43569124 | Lcy5g0825 | Lcy-Chr5:13058564 | 1.71E-65 | transposed | |
Lcy4g1753 | Lcy-Chr4:43510900 | Lcy5g0825 | Lcy-Chr5:13058564 | 1.29E-06 | transposed | |
Lcy4g2161 | Lcy-Chr4:48177052 | Lcy5g0825 | Lcy-Chr5:13058564 | 8.81E-25 | transposed | |
Lcy12g0857 | Lcy-Chr12:11843620 | Lcy5g0825 | Lcy-Chr5:13058564 | 1.80E-06 | wgd | |
Lcy12g0891 | Lcy-Chr12:12724307 | Lcy5g0825 | Lcy-Chr5:13058564 | 1.99E-26 | wgd |
Pathway information
