Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0826 ATGATGATGTCAATACTCCACCCTAAAATATATGCCTTGAATATGATATTTGACACTTCGAACGACCAAGTACGGGGGTCTCGCTGCCCGGTCAGCGAGTCGGGGTCCAGGGGCGAAGCGCCTGGTTTTGGAGGTTCGGGGGCGCAATATAAGATGAATTCAGTTCTTCTAAAAGTCAGTCTGAATATGGATACCAACAGTTCTCTTATATTGGTACACTCAAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTACATTCATACTTGGCTGATTTTGGTTTAGCAATACACCGGAAATATCTGAAAGGAATCTCTGCAGAAAATTGGAAGTCATCTGGAAAGCCAACAGGTGGTTTCTACAAGAAAAACATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTATAGTTTTGGTATCTTAATGAAGTAA 516 40.89 MMMSILHPKIYALNMIFDTSNDQVRGSRCPVSESGSRGEAPGFGGSGAQYKMNSVLLKVSLNMDTNSSLILVHSKALQYLHNLGIVHRDVKPANVLLDKDLHSYLADFGLAIHRKYLKGISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKEIHTDLSDVYSFGILMK 171
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 13086591 13088570 - Maker00010627 Lcy5g0826 632641
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0826 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0826 171 Gene3D Transferase(Phosphotransferase) domain 1 1 171 - -
Lcy5g0826 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 85 97 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0826 171 Pfam Protein kinase domain 59 170 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0826 171 SUPERFAMILY Protein kinase-like (PK-like) 75 170 IPR011009 -
Lcy5g0826 171 PANTHER SERINE/THREONINE-PROTEIN KINASE PLK 75 170 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0826 Lcy-Chr5:13086591 Lcy1g2551 Lcy-Chr1:46483928 1.47E-14 dispersed
Lcy2g1659 Lcy-Chr2:24274494 Lcy5g0826 Lcy-Chr5:13086591 1.82E-09 wgd
Lcy5g0826 Lcy-Chr5:13086591 Lcy5g1341 Lcy-Chr5:31986784 3.45E-07 wgd
Lcy5g0826 Lcy-Chr5:13086591 Lcy9g0283 Lcy-Chr9:7252774 1.48E-09 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65929 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0826 - - - 0.0