Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g0826 | ATGATGATGTCAATACTCCACCCTAAAATATATGCCTTGAATATGATATTTGACACTTCGAACGACCAAGTACGGGGGTCTCGCTGCCCGGTCAGCGAGTCGGGGTCCAGGGGCGAAGCGCCTGGTTTTGGAGGTTCGGGGGCGCAATATAAGATGAATTCAGTTCTTCTAAAAGTCAGTCTGAATATGGATACCAACAGTTCTCTTATATTGGTACACTCAAAGGCTTTGCAATATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTACATTCATACTTGGCTGATTTTGGTTTAGCAATACACCGGAAATATCTGAAAGGAATCTCTGCAGAAAATTGGAAGTCATCTGGAAAGCCAACAGGTGGTTTCTACAAGAAAAACATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTATAGTTTTGGTATCTTAATGAAGTAA | 516 | 40.89 | MMMSILHPKIYALNMIFDTSNDQVRGSRCPVSESGSRGEAPGFGGSGAQYKMNSVLLKVSLNMDTNSSLILVHSKALQYLHNLGIVHRDVKPANVLLDKDLHSYLADFGLAIHRKYLKGISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKEIHTDLSDVYSFGILMK | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 13086591 | 13088570 | - | Maker00010627 | Lcy5g0826 | 632641 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g0826 | 171 | ProSiteProfiles | Protein kinase domain profile. | 1 | 171 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g0826 | 171 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 171 | - | - | |
| Lcy5g0826 | 171 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 85 | 97 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy5g0826 | 171 | Pfam | Protein kinase domain | 59 | 170 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy5g0826 | 171 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 170 | IPR011009 | - | |
| Lcy5g0826 | 171 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PLK | 75 | 170 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0826 | Lcy-Chr5:13086591 | Lcy1g2551 | Lcy-Chr1:46483928 | 1.47E-14 | dispersed | |
| Lcy2g1659 | Lcy-Chr2:24274494 | Lcy5g0826 | Lcy-Chr5:13086591 | 1.82E-09 | wgd | |
| Lcy5g0826 | Lcy-Chr5:13086591 | Lcy5g1341 | Lcy-Chr5:31986784 | 3.45E-07 | wgd | |
| Lcy5g0826 | Lcy-Chr5:13086591 | Lcy9g0283 | Lcy-Chr9:7252774 | 1.48E-09 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65929 | None | None | None | None | Lcy | PK |
Pathway information