Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0828 ATGGTTCTCTCTCTCATCCCTCTCTCTCTCCTCATCCTCATCCTCGCCTACAACCTCTACAACCGCCTCCGGTTCAAGCTCCCCCCCGGCCCCCGCCCGCTTCCGGTCGTCGGAAACCTCTACGACGTCAAGCCGGTCCGATTCAGATGCTACGCCGAGTGGGCCCAGCAGTACGGTCCGATCATATCCGTGTGGTTCGGATCGACGCTAAACGTCGTCGTGTCGAACTCGGAGCTGGCGAGGGAGGTGCTGAAGGAACACGACCAGAGCCTCGCCGACCGCCACCGTACCAGATCGACGGCGAAGTTCAGCCGCGACGGGAAGGACCTGATTTGGGCCGACTATGGGCCGCACTATGTGAAGGTCAGGAAAGTTTGTACCATCGAACTTTTCTCTCCTAAGCGACTCGAATCTCTGAGGCCGATTAGAGAAGATGAAGTTTCCGCCATGGTTGAAGACGTTTTCAACCACTGCACTAAATCTGAGAATTCTGGAAAGAGTTTCAAGCTGAGGGAATTTTTGGGAGCAGTTTCATTCAACAACATCACAAGACTCGCGTTCGGGAAGAGGTTCGTCGACTCCAATGGCGTTATGGACGAACAGGGGCTGGAATTCAAGGCCATTGTCGCCAATGGCCTCAAGATCGGCGCCTCCCTCGCCATGGCCGAGCACATTCCCTGGCTTCGCTGGATGTTCCCTCTTGAAGAAGCCGCCTTCGCCAAGCACGGCGCCCGCCGCGATCGCCTCACTCAAGCCATCATGGAAGAGCACACCAAAGCTCGCAATTTGAGCGGCAATGTCAAGAACCACTTCGTCGATGCTCTCCTCACTCTCAAAGACAAGTACGATCTCAGTGAAGACACCATCATCGGCCTCCTTTGGGATATGATCACGGCTGGCATGGACACGACATCAATTTCGGTGGAATGGGCGATGGCGGAGATCGTAAGGAACCCTAGAGTGCAAAAGAAGGTTCAGGAGGAACTAGACAATGTGATAGGAGTCGATCGGATCATGACAGAGAACGATTTCTCAAATCTTCCATATCTCCAATGCGTTGTAAAGGAAGCAATGAGATTACATCCACCGACGCCATTGATGCTGCCGCACCGATCCAACGCCAACGTCAAGATCGGCGGCTACGACATCCCCAAGGGCTCGAACGTGCACGTGAACGTGTGGGCGGTGGCACGTGACCCGGCAGTTTGGAAGAACCCAGAGGAATTTCGGCCGGAGCGGTTTTTAGAAGAGGATGTGGACATGAAAGGGCACGATCTGCGGCTGCTGCCATTCGGGGCAGGGCGGAGGGTCTGCCCAGGGGCTCAATTGGGGATCAATTTGGTGACCTCAATGTTGGGGCACCTTCTGCACCACTTTGAATGGACTCCATCACCGGGGATGAAGCCGGAGGAGATCGACATGTCGGAGAGCCCTGGATTGGTGTCGTACATGAAGACGCCAGTTCAAGCTGTGGCCACTCCCAGGCTGCCTTCGGGACTGTACAAACGGGTGCCTGTGGACATGTAA 1527 55.4 MVLSLIPLSLLILILAYNLYNRLRFKLPPGPRPLPVVGNLYDVKPVRFRCYAEWAQQYGPIISVWFGSTLNVVVSNSELAREVLKEHDQSLADRHRTRSTAKFSRDGKDLIWADYGPHYVKVRKVCTIELFSPKRLESLRPIREDEVSAMVEDVFNHCTKSENSGKSFKLREFLGAVSFNNITRLAFGKRFVDSNGVMDEQGLEFKAIVANGLKIGASLAMAEHIPWLRWMFPLEEAAFAKHGARRDRLTQAIMEEHTKARNLSGNVKNHFVDALLTLKDKYDLSEDTIIGLLWDMITAGMDTTSISVEWAMAEIVRNPRVQKKVQEELDNVIGVDRIMTENDFSNLPYLQCVVKEAMRLHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDPAVWKNPEEFRPERFLEEDVDMKGHDLRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFEWTPSPGMKPEEIDMSESPGLVSYMKTPVQAVATPRLPSGLYKRVPVDM 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13116027 13120130 - Maker00010476 Lcy5g0828 632643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0828 508 CDD CYP98 58 490 - -
Lcy5g0828 508 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 Gene3D Cytochrome P450 21 498 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 FunFam Cytochrome P450 21 499 - -
Lcy5g0828 508 PANTHER CYTOCHROME P450 98A9 8 502 - -
Lcy5g0828 508 Pfam Cytochrome P450 28 480 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 SUPERFAMILY Cytochrome P450 28 495 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0828 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1582 Lcy-Chr4:39876299 Lcy5g0828 Lcy-Chr5:13116027 5.21E-77 dispersed
Lcy5g0828 Lcy-Chr5:13116027 Lcy7g0111 Lcy-Chr7:1010988 7.09E-110 dispersed
Lcy9g2146 Lcy-Chr9:46082777 Lcy5g0828 Lcy-Chr5:13116027 3.89E-49 dispersed
Lcy1g2267 Lcy-Chr1:34025769 Lcy5g0828 Lcy-Chr5:13116027 7.08E-27 wgd
Lcy12g1255 Lcy-Chr12:26381685 Lcy5g0828 Lcy-Chr5:13116027 4.46E-76 wgd
Lcy4g1060 Lcy-Chr4:19586633 Lcy5g0828 Lcy-Chr5:13116027 6.49E-67 wgd
Lcy5g0828 Lcy-Chr5:13116027 Lcy8g0103 Lcy-Chr8:2370845 7.74E-92 wgd
Lcy5g0828 Lcy-Chr5:13116027 Lcy8g0934 Lcy-Chr8:33242475 2.28E-43 wgd
Lcy5g0828 Lcy-Chr5:13116027 Lcy8g0864 Lcy-Chr8:31169750 1.38E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0828 K09754 - csv:101217257 897.886