Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0839 ATGATTTCCGTTGCCTCACCGTGCGACGGCCGGCAGCCCGAACTCTCCCCCAAAATCTCCTCTCCACCACCGCCAACGACCCATGTTTTCCGATCGAAGTTACCAGATATTGCAATCCCCAATCATCTCCCTCTTCACAGCTACTGTTTTCAGAAGCTCTCTGAATTATCCGAGCACCCTTGTTTGATTGTCGGCTCCACTGGAAAATCCTATTCCTTCTCCGAAACCCATATGTTCTCGCGGAAGGCCGCCGCCACTTTCTCTAAACTCGGAATTAAGAAGGGCGATGTCATTATGATTCTCCTCCAAAACTCTGCAGAATTCGTTTTCTCTTTCATGGGTTCCTCCATGATCGGCGCCGTTGCCACCACCGCAAATCCGTATTACACGGCGGTGGAGATTTCCAAGCAGCTGAAGTCCTCCGGTGCCAAATTGGTCGTTACTTACTCACATTGCGTCGACAAGCTCCGAGAATCCGGCGAGGATCTCACCATCGTCACTGTCGATGACCCGCCGGAGAACTGTCTGAGCTTTTCGATGATTTGTGACGCCGATGAAAACGACGTGCCTACGGTGGAGATTGACCAAAACGACGCCGTTTCGCTGCCGTTCTCCTCCGGCACGACCGGGCTCCCCAAGGGGGTGATTTTGACCCATAGGAGTATGGTATCGAGTGTGGCTCAACAGGTAGATGGAGAGAATCCGAACGTGTATTTGAGAAAGAACGACGTAGTTTTATGCGTGCTACCGATGTTCCACATATTCGCCTTGAGCAGCATTGTTTTGATTTCGATTAGGTCAGGGGCGACACTACTATTGATGGAGAAGTTCGAAATAGAAACATTGTTACGACTGATAGAGACACATCGGGTGACAGTGGCGACGGTGGTGCCACCGCTGGTGGTGGCGCTGGTGAAGAACCCCAAGGTAGCGGATTGCGACTTGAGCTCGATCAGAATGGTGTTTTCCGGTGCGGCGCCGCTCCGAAAGGAGCTGGAGGAGGCCCTCATGCAGAGGATACCTCAAGCAATTTTTGGTCAGGGATATGGGATGACAGAGGCGGGACCCGTGCTAAGCATGTGCGCGGCTTTTGCAAAGGAGCCACCAATGCCAACAAAGTCAGGATCTTGTGGTAGAGTGGTGAGAAACTCTGAGCTCAAAATCATTGACCCACAAACTGGTGCATCCCTTAGCTATAATCAACCCGGAGAGATTTGGGTTCGTGGTCCACAAATTATGAAAGGATATTTGAACGACCCGGAGGCCACGTCATTGACCGTCGACGCGGAGGGTTGGCTTCATACGGGTGACATTGGCTACATTGACGATGAAGAAGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGATTTCAGGTGGCACCAGCGGAGTTGGAGGCCCTTCTCGTAGACCATCCCTCTATTGTAGAGGCAGCTGTGGTCCCGCAAAATGATGACGTTGCTGGTGAAGTTCCAGTGGCTTTCGTGGTTCGATCAACAGAAAATGAACTGACCGAGGAGGCAGTAAAAGAATTCATAGCAAAACAGGTTGTGTTCTACAAGAGATTGCAGAAAGTTTACTTTGTGCAGACAATTCCAAAATCACCCTCAGGGAAGATCTTGAGAAAGGAACTCAAAGCCAAGCTCTCAGTCTCACATGCTGCCTTCTAA 1683 50.03 MISVASPCDGRQPELSPKISSPPPPTTHVFRSKLPDIAIPNHLPLHSYCFQKLSELSEHPCLIVGSTGKSYSFSETHMFSRKAAATFSKLGIKKGDVIMILLQNSAEFVFSFMGSSMIGAVATTANPYYTAVEISKQLKSSGAKLVVTYSHCVDKLRESGEDLTIVTVDDPPENCLSFSMICDADENDVPTVEIDQNDAVSLPFSSGTTGLPKGVILTHRSMVSSVAQQVDGENPNVYLRKNDVVLCVLPMFHIFALSSIVLISIRSGATLLLMEKFEIETLLRLIETHRVTVATVVPPLVVALVKNPKVADCDLSSIRMVFSGAAPLRKELEEALMQRIPQAIFGQGYGMTEAGPVLSMCAAFAKEPPMPTKSGSCGRVVRNSELKIIDPQTGASLSYNQPGEIWVRGPQIMKGYLNDPEATSLTVDAEGWLHTGDIGYIDDEEEIFIVDRVKEIIKFKGFQVAPAELEALLVDHPSIVEAAVVPQNDDVAGEVPVAFVVRSTENELTEEAVKEFIAKQVVFYKRLQKVYFVQTIPKSPSGKILRKELKAKLSVSHAAF 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13457090 13463897 - Maker00010543 Lcy5g0839 632654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0839 560 MobiDBLite consensus disorder prediction 1 26 - -
Lcy5g0839 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 550 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Lcy5g0839 560 Gene3D - 454 556 IPR045851 -
Lcy5g0839 560 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 454 - -
Lcy5g0839 560 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Lcy5g0839 560 Pfam AMP-binding enzyme 58 417 IPR000873 -
Lcy5g0839 560 Gene3D - 25 453 IPR042099 -
Lcy5g0839 560 CDD 4CL 39 549 - -
Lcy5g0839 560 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Lcy5g0839 560 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Lcy5g0839 560 SUPERFAMILY Acetyl-CoA synthetase-like 37 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1409 Lcy-Chr12:31607086 Lcy5g0839 Lcy-Chr5:13457090 6.25E-54 dispersed
Lcy5g0304 Lcy-Chr5:2882684 Lcy5g0839 Lcy-Chr5:13457090 4.29E-130 dispersed
Lcy5g0839 Lcy-Chr5:13457090 Lcy7g0035 Lcy-Chr7:292427 1.46E-125 dispersed
Lcy5g0839 Lcy-Chr5:13457090 Lcy5g0840 Lcy-Chr5:13474378 1.94E-192 tandem
Lcy12g1408 Lcy-Chr12:31603043 Lcy5g0839 Lcy-Chr5:13457090 0 transposed
Lcy12g1407 Lcy-Chr12:31599341 Lcy5g0839 Lcy-Chr5:13457090 1.24E-38 wgd
Lcy5g0839 Lcy-Chr5:13457090 Lcy8g0946 Lcy-Chr8:33605182 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0839 K01904 - csv:101221344 908.286