Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0840 ATGATTTTCGTTGCCCTACCGTGCGATGGCCGGCAGCCCGAACTCTCCCCCAAAATCTCCTCTCCACCGCCGCCGACGACCCATGTTTTCCGATCGAAGTTACCGGATATTGCAATCCCCAATCATCTCCTTCTTCATAGCTACTGTTTTCAGAAGCTCTCTGAATTCTCCAACCGCCCTTGTTTGATCGTCGGCTCCACTGGAAAATCCTATTCCTTCTTCGAAACCCATCTGTTCTCGCGGAAGGCCGCCGCGACTTTCTCTAAACTTGGAATTAAGAAGGGCGATGTCATTATGATTCTCCTCCAGAACTCTGCGGAATTCCTGAAGTCCTCCAGTTCCAAATTAGTCGTTACTTACTCTCATTGCGTCGACGAGCTTCGAGAATCCGGCGAGGATCTCACCATCGTCACTGTCGATGACCCGCCGGAGAACTGTCTGAGCTTTTCAATGGATTATGACGCCGACGAAAACGACATGCCTACGGTGGAGATTGACCAAAACGACGCTGTTTCGCTGCCGTTCTCCTCCGACACGACCGGGCTCCCCAAGGGGGTGATTTTGACCCATAGGAGTATGGTATCGAGTGTGGCTCAACAGGTAGATGGAGAGAATCCGAACGTGTATTTGAGAAAGAACGACGTATTTTTATGCGTGCTACCGATGTTCCACATATTTGCCTTGAGTAGCATTGTTTTGATTTCGATTTGGTCATGGGCGACACTACTATTGATGGAGAAGTTCGAAATAGAAACATTGTTACGGCTGATAGAGACGCATCGGGTGACGGTGGCGACGGTGGTGCCACCACTGGTGGTGGCGCTGGGGAAGAACCCTAAGGTAGCGAATTGCGACTTGAGCTCGATCAGAATGGTGTTTTCCGGGGCGGCGCCGCTCCGAAAGGAGCTAGAGGAGGCCCTCATGCTGAGGATACCTCAAGCAATTTTTGGTCGGGTAAATATTGTAGGGCGAGTTTCAATGCTAGAGTCACATGGAATTGTCTCATTGATAGAATTGATTAATGCCAAAGAATCAGATAAAATCGTGACTCTAACCACATCCAATGACTTTGCCAAACGTAGACCTTCCAGGACCGCCACCGCTTCCACCCCCAAAGGGGACGTACAAACATCTGAAATTGTCGTCTGA 1149 49.87 MIFVALPCDGRQPELSPKISSPPPPTTHVFRSKLPDIAIPNHLLLHSYCFQKLSEFSNRPCLIVGSTGKSYSFFETHLFSRKAAATFSKLGIKKGDVIMILLQNSAEFLKSSSSKLVVTYSHCVDELRESGEDLTIVTVDDPPENCLSFSMDYDADENDMPTVEIDQNDAVSLPFSSDTTGLPKGVILTHRSMVSSVAQQVDGENPNVYLRKNDVFLCVLPMFHIFALSSIVLISIWSWATLLLMEKFEIETLLRLIETHRVTVATVVPPLVVALGKNPKVANCDLSSIRMVFSGAAPLRKELEEALMLRIPQAIFGRVNIVGRVSMLESHGIVSLIELINAKESDKIVTLTTSNDFAKRRPSRTATASTPKGDVQTSEIVV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13474378 13476834 - Maker00010404 Lcy5g0840 632655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0840 382 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 108 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Lcy5g0840 382 Pfam AMP-binding enzyme 108 313 IPR000873 -
Lcy5g0840 382 Gene3D - 25 354 IPR042099 -
Lcy5g0840 382 SUPERFAMILY Acetyl-CoA synthetase-like 36 312 - -
Lcy5g0840 382 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0840 Lcy-Chr5:13474378 Lcy8g0946 Lcy-Chr8:33605182 7.00E-195 dispersed
Lcy5g0839 Lcy-Chr5:13457090 Lcy5g0840 Lcy-Chr5:13474378 1.94E-192 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0840 K01904 - csv:101221344 449.129