Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0911 | AATTTTGGACCACTCCGATTTGCAAAAGAGCTGGCGAAGACAGCGCAATACCAGCCCAAGAAGACAGCCAGGAAACGGGGTCCGGAGGGAGAACAGGCCAAAGGGTCGGGCCAAAAGTCGAAGGGATCGGGCTTTTGGCCCGACCCCGTGCTCGGCCTCGGCCCAAGGCCGGGGCAAAGCCGACCACTCTGCCCGCTTAGTTCTTCCACTTTCGTTCGGTCCCTGGTGCCCTCGGTCGCCCCGGTTCTATTGGGTTCAGCCCGAATCGTCCACAAACGCTGGAAAAACCTAATATGCCAACCCGGGTCATGTCTTCCCCGGGTTCAAACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGGTTTTGTTTCCGCTGTTCCTTGGATTTTTCCACCTTCCGGAGCTCGATTCATTTCTGAAACTGAAGTCCCATCTCGTGATTCCTCCCGTTTTTATGGTGTGGGCTTCAGTTTTGTGGACCTTAAGACTTCATTAATATCTGCTTTAATTTCAATGGAAATTCTATGGGTTGACCATAGTAACCTTGAAGAATTCTATCAAGGGCTACAAACAACTTTGGCTGTAGCTGATGCTTTGTTCAATCCCTCAAGTAGCCTAGGCAAGGGGAACACTAGGGGTGCGGAGGGAAGCTCTATTCCTTCATCTCGGATCTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCAGCTCTGAACAACAACATCCAGTTTAGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTATCATGGGGTCTCAAACATTGCCATTACAGAAAGAATCCAATCCAAATTTGGTTTCTACATCTAGTGGTCCTCGTGAAAACTGGGGAGAGTCTAACATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGATACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCGGCATATGATTCTAGCAACAAATCGAAAGAAAAAACAGCAGATCAAAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGGGCCCGTCAGCAGGGTATATTTATTTCAAGTTCAGGAGACCAAGCTCATTCAATGAGTGGAAATGGGGCCCTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGCGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTATTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGATTGGGTTTGCAATGATGTTTGTCTTCAAAGCTATGAAGTGTAGGATCGAGGGTAAGTCTTTTACTGTAGGCTTTGACTCTTGTAGAAGAGGTTCGACTTCTAATATGCCACGTTCTTGTAATATCCCTTTACCGCGTGCTTTATTGTGCACATGCATCAATTCCTCCTCCAGCAAAACCAAATCTCCTTGTTCTTACACCTTTTCTCTTGCACTTGAACTCACAATCCTCTTTCTTGCTTGTGTTATAATTCTAGCCCCTGTGCTCCATAATGTCAGCATGGTATCTTTTGTAGCATTCTCACCCAAAACTGCAACTATGTTAATGCAGCTTCTTGTAAACCAATTGGAGCCTTTGACTGAGCAGCAAGTAGTGGGCATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACACCGGCAACGTCGGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGACAATCTTCGTCAACAAACACTTCAACAAATGCACCGCATATTGACAACCCGTCAATCAGCCCGTGCGCTTCTCGCAATAAATGACTACTTCTCCCGTCTCAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA | 2271 | 46.24 | NFGPLRFAKELAKTAQYQPKKTARKRGPEGEQAKGSGQKSKGSGFWPDPVLGLGPRPGQSRPLCPLSSSTFVRSLVPSVAPVLLGSARIVHKRWKNLICQPGSCLPRVQTNSLLVSREGQGFVSAVPWIFPPSGARFISETEVPSRDSSRFYGVGFSFVDLKTSLISALISMEILWVDHSNLEEFYQGLQTTLAVADALFNPSSSLGKGNTRGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSALNNNIQFSSLIKPLASTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKIGFAMMFVFKAMKCRIEGKSFTVGFDSCRRGSTSNMPRSCNIPLPRALLCTCINSSSSKTKSPCSYTFSLALELTILFLACVIILAPVLHNVSMVSFVAFSPKTATMLMQLLVNQLEPLTEQQVVGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 15586818 | 15597776 | + | Maker00028883 | Lcy5g0911 | 632726 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0911 | 756 | SUPERFAMILY | Leucine zipper domain | 361 | 404 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0911 | 756 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 364 | 379 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0911 | 756 | MobiDBLite | consensus disorder prediction | 323 | 338 | - | - | |
Lcy5g0911 | 756 | FunFam | BZIP family transcription factor | 360 | 409 | - | - | |
Lcy5g0911 | 756 | Coils | Coil | 380 | 407 | - | - | |
Lcy5g0911 | 756 | Pfam | bZIP transcription factor | 360 | 401 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0911 | 756 | SMART | brlzneu | 357 | 420 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0911 | 756 | Pfam | Seed dormancy control | 444 | 516 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lcy5g0911 | 756 | Gene3D | - | 360 | 411 | - | - | |
Lcy5g0911 | 756 | ProSiteProfiles | DOG1 domain profile. | 426 | 753 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lcy5g0911 | 756 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 318 | 516 | - | - | |
Lcy5g0911 | 756 | MobiDBLite | consensus disorder prediction | 288 | 322 | - | - | |
Lcy5g0911 | 756 | CDD | bZIP_HBP1b-like | 361 | 413 | - | - | |
Lcy5g0911 | 756 | MobiDBLite | consensus disorder prediction | 13 | 52 | - | - | |
Lcy5g0911 | 756 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 359 | 403 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0911 | 756 | MobiDBLite | consensus disorder prediction | 288 | 362 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0967 | Lcy-Chr10:31075962 | Lcy5g0911 | Lcy-Chr5:15586818 | 3.34E-137 | dispersed | |
Lcy5g0911 | Lcy-Chr5:15586818 | Lcy8g1992 | Lcy-Chr8:46218478 | 5.86E-84 | dispersed | |
Lcy13g1614 | Lcy-Chr13:35099510 | Lcy5g0911 | Lcy-Chr5:15586818 | 9.77E-146 | transposed | |
Lcy7g0710 | Lcy-Chr7:6731665 | Lcy5g0911 | Lcy-Chr5:15586818 | 6.97E-144 | transposed | |
Lcy5g0911 | Lcy-Chr5:15586818 | Lcy5g1196 | Lcy-Chr5:27254294 | 3.10E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20100 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0911 | K14431 | - | csv:101219149 | 558.14 |