Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0911 AATTTTGGACCACTCCGATTTGCAAAAGAGCTGGCGAAGACAGCGCAATACCAGCCCAAGAAGACAGCCAGGAAACGGGGTCCGGAGGGAGAACAGGCCAAAGGGTCGGGCCAAAAGTCGAAGGGATCGGGCTTTTGGCCCGACCCCGTGCTCGGCCTCGGCCCAAGGCCGGGGCAAAGCCGACCACTCTGCCCGCTTAGTTCTTCCACTTTCGTTCGGTCCCTGGTGCCCTCGGTCGCCCCGGTTCTATTGGGTTCAGCCCGAATCGTCCACAAACGCTGGAAAAACCTAATATGCCAACCCGGGTCATGTCTTCCCCGGGTTCAAACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGGTTTTGTTTCCGCTGTTCCTTGGATTTTTCCACCTTCCGGAGCTCGATTCATTTCTGAAACTGAAGTCCCATCTCGTGATTCCTCCCGTTTTTATGGTGTGGGCTTCAGTTTTGTGGACCTTAAGACTTCATTAATATCTGCTTTAATTTCAATGGAAATTCTATGGGTTGACCATAGTAACCTTGAAGAATTCTATCAAGGGCTACAAACAACTTTGGCTGTAGCTGATGCTTTGTTCAATCCCTCAAGTAGCCTAGGCAAGGGGAACACTAGGGGTGCGGAGGGAAGCTCTATTCCTTCATCTCGGATCTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCAGCTCTGAACAACAACATCCAGTTTAGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTATCATGGGGTCTCAAACATTGCCATTACAGAAAGAATCCAATCCAAATTTGGTTTCTACATCTAGTGGTCCTCGTGAAAACTGGGGAGAGTCTAACATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGATACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCGGCATATGATTCTAGCAACAAATCGAAAGAAAAAACAGCAGATCAAAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGGGCCCGTCAGCAGGGTATATTTATTTCAAGTTCAGGAGACCAAGCTCATTCAATGAGTGGAAATGGGGCCCTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGCGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTATTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGATTGGGTTTGCAATGATGTTTGTCTTCAAAGCTATGAAGTGTAGGATCGAGGGTAAGTCTTTTACTGTAGGCTTTGACTCTTGTAGAAGAGGTTCGACTTCTAATATGCCACGTTCTTGTAATATCCCTTTACCGCGTGCTTTATTGTGCACATGCATCAATTCCTCCTCCAGCAAAACCAAATCTCCTTGTTCTTACACCTTTTCTCTTGCACTTGAACTCACAATCCTCTTTCTTGCTTGTGTTATAATTCTAGCCCCTGTGCTCCATAATGTCAGCATGGTATCTTTTGTAGCATTCTCACCCAAAACTGCAACTATGTTAATGCAGCTTCTTGTAAACCAATTGGAGCCTTTGACTGAGCAGCAAGTAGTGGGCATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACACCGGCAACGTCGGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGACAATCTTCGTCAACAAACACTTCAACAAATGCACCGCATATTGACAACCCGTCAATCAGCCCGTGCGCTTCTCGCAATAAATGACTACTTCTCCCGTCTCAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 2271 46.24 NFGPLRFAKELAKTAQYQPKKTARKRGPEGEQAKGSGQKSKGSGFWPDPVLGLGPRPGQSRPLCPLSSSTFVRSLVPSVAPVLLGSARIVHKRWKNLICQPGSCLPRVQTNSLLVSREGQGFVSAVPWIFPPSGARFISETEVPSRDSSRFYGVGFSFVDLKTSLISALISMEILWVDHSNLEEFYQGLQTTLAVADALFNPSSSLGKGNTRGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSALNNNIQFSSLIKPLASTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKIGFAMMFVFKAMKCRIEGKSFTVGFDSCRRGSTSNMPRSCNIPLPRALLCTCINSSSSKTKSPCSYTFSLALELTILFLACVIILAPVLHNVSMVSFVAFSPKTATMLMQLLVNQLEPLTEQQVVGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15586818 15597776 + Maker00028883 Lcy5g0911 632726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0911 756 SUPERFAMILY Leucine zipper domain 361 404 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0911 756 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 364 379 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0911 756 MobiDBLite consensus disorder prediction 323 338 - -
Lcy5g0911 756 FunFam BZIP family transcription factor 360 409 - -
Lcy5g0911 756 Coils Coil 380 407 - -
Lcy5g0911 756 Pfam bZIP transcription factor 360 401 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0911 756 SMART brlzneu 357 420 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0911 756 Pfam Seed dormancy control 444 516 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy5g0911 756 Gene3D - 360 411 - -
Lcy5g0911 756 ProSiteProfiles DOG1 domain profile. 426 753 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy5g0911 756 PANTHER TRANSCRIPTION FACTOR TGA9 318 516 - -
Lcy5g0911 756 MobiDBLite consensus disorder prediction 288 322 - -
Lcy5g0911 756 CDD bZIP_HBP1b-like 361 413 - -
Lcy5g0911 756 MobiDBLite consensus disorder prediction 13 52 - -
Lcy5g0911 756 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 359 403 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0911 756 MobiDBLite consensus disorder prediction 288 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0967 Lcy-Chr10:31075962 Lcy5g0911 Lcy-Chr5:15586818 3.34E-137 dispersed
Lcy5g0911 Lcy-Chr5:15586818 Lcy8g1992 Lcy-Chr8:46218478 5.86E-84 dispersed
Lcy13g1614 Lcy-Chr13:35099510 Lcy5g0911 Lcy-Chr5:15586818 9.77E-146 transposed
Lcy7g0710 Lcy-Chr7:6731665 Lcy5g0911 Lcy-Chr5:15586818 6.97E-144 transposed
Lcy5g0911 Lcy-Chr5:15586818 Lcy5g1196 Lcy-Chr5:27254294 3.10E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20100 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0911 K14431 - csv:101219149 558.14