Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0961 ATGTTTATCGTGGTGGGTCATTTTTTTCCCTTCCTTCTTCTCCTTCCTCTTAAAACCAACGCAAACCCACCAATTTCCACTCCTCTCTCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTCCTCTGCTTTTGAATTTTACCAAAATGGTTATGGCTGCCGATTCCCAGTTCCATGTTCTTGCCGTCGATGACAGCCTCATAGATAGAAAGCTCATCGAGAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACTGTCGATTCTGGTAGCAAGGCCTTGGAGTTTCTGGGTTTGATTGAAGAAGATGAACATACGAACTTCAAACCCCCTTCTTCTTCTTCTCTTTCCTCCGACAATCATCATCAGGAAGTGGAAGTGAATCTTATCATTACTGATTACTGCATGCCTGGAATGACTGGTTTCGATTTGCTCAAGAAAGTTAAGGAATCGACGTCTCTCAGAAACATACCAGTCGTGATAATGTCGTCCGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGAGCGGAAGAGTTCTTCCTGAAGCCAGTCCGATTGTGCGATGTGAATAAACTGAAGCCGCACATGATGAAGACGAAACTGAAGGATCAAAATGAAGAAGAAGAAGAATCAACAGAGAGCGAATTCGAATCGGTAGAACAGCAAGAACAAAAACAATTGCAGATGAGCAGTAACAAGAGAAAGGCGGCTATGGAGGAAGGTGTGGGGGCGGAGAGAAGAAGAAGAAGGTACAACAACAATGGCGTCGCGACTGTGATTTGA 798 44.24 MFIVVGHFFPFLLLLPLKTNANPPISTPLSALSLSLSLSLFLSPLLLNFTKMVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIEEDEHTNFKPPSSSSLSSDNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLKDQNEEEEESTESEFESVEQQEQKQLQMSSNKRKAAMEEGVGAERRRRRYNNNGVATVI 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17041208 17042865 + Maker00029035 Lcy5g0961 632776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0961 265 Gene3D - 61 264 - -
Lcy5g0961 265 Coils Coil 207 227 - -
Lcy5g0961 265 CDD REC_typeA_ARR 62 197 - -
Lcy5g0961 265 SUPERFAMILY CheY-like 59 194 IPR011006 -
Lcy5g0961 265 Pfam Response regulator receiver domain 124 191 IPR001789 GO:0000160(InterPro)
Lcy5g0961 265 ProSiteProfiles Response regulatory domain profile. 61 202 IPR001789 GO:0000160(InterPro)
Lcy5g0961 265 SMART REC_2 60 197 IPR001789 GO:0000160(InterPro)
Lcy5g0961 265 MobiDBLite consensus disorder prediction 203 265 - -
Lcy5g0961 265 PANTHER TWO-COMPONENT RESPONSE REGULATOR 57 240 IPR045279 GO:0009736(InterPro)
Lcy5g0961 265 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1007 Lcy-Chr10:32101321 Lcy5g0961 Lcy-Chr5:17041208 4.69E-43 dispersed
Lcy10g1232 Lcy-Chr10:35001365 Lcy5g0961 Lcy-Chr5:17041208 1.21E-51 dispersed
Lcy5g0961 Lcy-Chr5:17041208 Lcy7g0695 Lcy-Chr7:6447304 6.28E-64 dispersed
Lcy5g0961 Lcy-Chr5:17041208 Lcy1g1833 Lcy-Chr1:20351997 5.18E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20101 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0961 K14492 - csv:101220810 303.523