Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1003 ATGAGGCAAGTCTCATTTACTATTGCATATGGAAAATTCACAGATGAAGAGTTCCAAAAATTTACAGTAGAGTCTGATGTCTATAAAAGCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGATGATGTGAAGAAGGTCGTGGCTTGTCTTCTATTTGGAGGATCCAGGAAGTTTCTCAAGTTTGTTGAGAAGACAACTCCAGTTGTTGTCTATACTTCTGGAAAAGGTTCATCGGCTGCTGGTCTTACAGCTTCACGAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGTGGTGTTATCTGCATTGATGGGTTTGACAAAATGAGATCAGAAGATAGAGTTGCAATTCATGAAGCCATGGAACAACAGACAATATCAATTGCTAAAGCAGGAATAACAACGACGGCACAGGATAACATTGATTTGCAGACAACAATTCTCTCCAGATTTGATTTAATTTTCATCGTGAAAGATATAAGGATGTGCAGTCAAGATAAGGTTGGTTTTGTTTTCAAACCTCTAAGTTATAGTATCTGGCGACCCTGTGCTAATAGCAATGGCTTAGTTACTGTAGCTGAAAGATATTGGTCAAGCGATACGTTGTGTACACTTTATCAAGACGAGTGTGACACAAATATTGTAATCTCCCTACCATTGCCTGACTTGAAGTTGGGTTTAAATGATAAGATTGGCCTTGAGAAAGTGTCACAGTTGAAGTCCCGTTCAACTAAAAGATTTGGAGACTTGAGTCCTCATGTCTTTACAGTTGCTGAAGTGCCATATAGTTGGAAGCAAAGAACCATATCGCAGTTCGATCATTACTGGATTTCCGATGTCATTGGATTGATGCAGGCCCTTGTCGTCCTGGAAACTTCAATGACAAGTATAGGAAGTTGTGGGGTGGTGAAATCATGGGTTCCAAGTCATAGGCCAAAACCAAAGCAAAGGAGAAGCTCCTTGCCAATGAAGCTGCTCAAAGGATGTAGGGAAGGTGAACTTTTAGAATAA 1023 40.08 MRQVSFTIAYGKFTDEEFQKFTVESDVYKSICSKIAPSIFGHDDVKKVVACLLFGGSRKFLKFVEKTTPVVVYTSGKGSSAAGLTASREFYLEGGAMVLADGGVICIDGFDKMRSEDRVAIHEAMEQQTISIAKAGITTTAQDNIDLQTTILSRFDLIFIVKDIRMCSQDKVGFVFKPLSYSIWRPCANSNGLVTVAERYWSSDTLCTLYQDECDTNIVISLPLPDLKLGLNDKIGLEKVSQLKSRSTKRFGDLSPHVFTVAEVPYSWKQRTISQFDHYWISDVIGLMQALVVLETSMTSIGSCGVVKSWVPSHRPKPKQRRSSLPMKLLKGCREGELLE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18784881 18791708 - Maker00004341 Lcy5g1003 632818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1003 340 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 14 60 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)
Lcy5g1003 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 164 IPR027417 -
Lcy5g1003 340 Pfam MCM P-loop domain 59 140 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g1003 340 PRINTS Mini-chromosome maintenance (MCM) protein family signature 95 109 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g1003 340 PRINTS Mini-chromosome maintenance (MCM) protein family signature 123 136 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g1003 340 ProSiteProfiles MCM family domain profile. 27 163 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g1003 340 SMART mcm 1 249 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g1003 340 Gene3D - 12 174 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0260 Lcy-Chr5:2459963 Lcy5g1003 Lcy-Chr5:18784881 6.13E-23 dispersed
Lcy5g1003 Lcy-Chr5:18784881 Lcy7g1690 Lcy-Chr7:34052896 1.48E-127 dispersed
Lcy11g0915 Lcy-Chr11:27405421 Lcy5g1003 Lcy-Chr5:18784881 7.50E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1003 K02209 - csv:101211822 254.603