Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1012 ATGCTTTCTCTTCCTTCACAACATAATCCTTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACCACCTTTTTTCTTCTGATTCCCATTCTAGCTCTCTCCTTTACAACCTCTCAATTTTGAAAGAGAAACTCCACCAAATCCAATCCGTCGTCAACGTCGTCATCTGCAACCATCAAAACTCGACCGAGTCCCCGCCCCCACCCCCGCCATCCATGGCGACTGCGGCCATCAACTCTTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATCTCAACAAATGAATAACCTCATCATAAACTCCTCCCTACACAACAATATCGTCGACAACGACCTTCACGGTCAACAGCACCACCATCGACAAGGTCTCGTCGACGACAACCACCGATCGACCACCCTTTTCAACATGGCCAACAACCACAACAATCACAATTGGTACAACACAGCAACTTATAACAACAGTAGTACTACTAGAATTGAAGAGACAAGAACGACAACGACAACAACAACAACAATACAAGATCATCGAATTTCGATCGATATTGTTGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTACTGTCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCAAACCTGAGAATGCACATGCGAGCGCACGGAGACGAGTACAAAGCGAGCGGAGCTTTGAGCAACCCGGAGAAGAGCCATGGAAGAGAGTTGAAGATAAGCAAGATGGGGACTAAATATTCATGTCCACAAGAGGGCTGCAGATGGAATCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCACTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGATGTCAAATGGCTGTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTTGCTTTGTTCATCGGCCACGCCCCGGCCATCGGTTCGTCGACAAAATTTTCGGGGAATTTGTGA 1074 45.81 MLSLPSQHNPLVSSSNDHHETLDHLFSSDSHSSSLLYNLSILKEKLHQIQSVVNVVICNHQNSTESPPPPPPSMATAAINSLIQELIMAASSMLFTSQQMNNLIINSSLHNNIVDNDLHGQQHHHRQGLVDDNHRSTTLFNMANNHNNHNWYNTATYNNSSTTRIEETRTTTTTTTTIQDHRISIDIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHGRELKISKMGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFIGHAPAIGSSTKFSGNL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19191599 19192672 + Maker00004801 Lcy5g1012 632827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1012 357 Gene3D Classic Zinc Finger 289 339 - -
Lcy5g1012 357 SMART c2h2final6 253 286 IPR013087 -
Lcy5g1012 357 SMART c2h2final6 291 313 IPR013087 -
Lcy5g1012 357 SMART c2h2final6 201 223 IPR013087 -
Lcy5g1012 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Lcy5g1012 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 351 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Lcy5g1012 357 SUPERFAMILY beta-beta-alpha zinc fingers 199 226 IPR036236 -
Lcy5g1012 357 Pfam Zinc finger, C2H2 type 201 223 IPR013087 -
Lcy5g1012 357 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Lcy5g1012 357 FunFam Zinc finger protein 574 200 225 - -
Lcy5g1012 357 Gene3D Classic Zinc Finger 187 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0797 Lcy-Chr1:6781505 Lcy5g1012 Lcy-Chr5:19191599 8.33E-71 dispersed
Lcy5g1012 Lcy-Chr5:19191599 Lcy9g0767 Lcy-Chr9:26033257 3.75E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20103 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1012 - - - 0.0