Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1032 ATGGCGCTCTCTCCATCTCTACAGCTCATTCGATTCCCTCCTCAACCACTATCCTCATCCTCCCACCATCTTCTCATCTCTGACCTCGGCGCCGTATCGCGCTTCTTCCGATCTCCATGGCTTTCCTCTTTGGTTCCGTCGCGGAAGTGCAGGATGAAGCTATCTTCGAGAACGAAGTGTTTCTCCATGTCCACCGAGGAGGATCAGTGGAGTGAATCGGAAGCGTTGGCGTCCGATGTCGACGAAGGGGGAGATCGTGAGGATGACATTGGTGTTCAGCAAGAGAGCTCTGTGGCCACTGCTACTTCTACGCAGAGGATTTCTTCCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATTCGAGAGTCGGTTTACGAGGTGTTAGAGGTTAAATTCGATGGAACAGTATCCACTAGGAAGATTAACAGACGCCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAACATGCTATTTTGCTTAATCTGGGTTCGTTGCGAGCAATAGCTATGCAGGATTGTGTCCTCATATTTGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAACGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTTCCGAATTAGAATCTGGCCTTGAGAGGTCAGTGAAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACTTTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATACGACGTATCTGTATTATGGGAAGAAATTGTACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCTGATGAAGAGGAGGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGGCGACTGGAAGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTAGCAGTTGGTGCTTTAGTTGCAGGAATATTTGGCATGAACTTGCGATCGTACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGCGCTGTTGTGGCATTCTTTCTCATGTATTCGTATCTCAGAGATAGGAGAATCCTATAG 1404 45.73 MALSPSLQLIRFPPQPLSSSSHHLLISDLGAVSRFFRSPWLSSLVPSRKCRMKLSSRTKCFSMSTEEDQWSESEALASDVDEGGDREDDIGVQQESSVATATSTQRISSSSPSDYLSLAIRESVYEVLEVKFDGTVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVSELESGLERSVKVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19946889 19963186 - Maker00004725 Lcy5g1032 632847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1032 467 MobiDBLite consensus disorder prediction 93 109 - -
Lcy5g1032 467 CDD Mrs2_Mfm1p-like 127 466 IPR039204 -
Lcy5g1032 467 Gene3D Magnesium transport protein CorA, transmembrane region 205 398 - -
Lcy5g1032 467 FunFam Magnesium transporter MRS2-11, chloroplastic 120 201 - -
Lcy5g1032 467 Pfam Magnesium transporter MRS2-like 135 397 - -
Lcy5g1032 467 FunFam Magnesium transporter MRS2-11, chloroplastic 203 398 - -
Lcy5g1032 467 Gene3D - 117 201 - -
Lcy5g1032 467 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 98 466 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy5g1032 467 Coils Coil 347 367 - -
Lcy5g1032 467 MobiDBLite consensus disorder prediction 71 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1032 K16075 - - csv:101219314 726.857
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G16010 85.3 1.5e-207 719.5
Lcy13g1649 . 3 401 MRS2 Gene Family AT1G16010 50.6 4.2e-106 382.5
Lcy13g0329 . 1 400 MRS2 Gene Family AT5G64560 71.6 9.4e-147 517.3
Lcy12g2154 . 1 354 MRS2 Gene Family AT5G64560 65.3 1.1e-118 424.1
Lcy4g0156 . 14 497 MRS2 Gene Family AT3G19640 63.0 1.9e-152 536.6
Lcy6g0580 . 59 560 MRS2 Gene Family AT3G58970 54.3 6.6e-128 454.9
Lcy13g1649 . 5 401 MRS2 Gene Family AT2G03620 64.9 4.3e-132 468.8
Lcy12g0512 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.4e-113 406.0
Lcy13g0329 . 1 362 MRS2 Gene Family AT5G09690 65.1 1.6e-115 413.3
Lcy12g2154 . 1 316 MRS2 Gene Family AT5G09690 61.1 1.2e-97 354.0
Lcy12g0512 . 40 383 MRS2 Gene Family AT5G09690 50.6 9.3e-79 291.2
Lcy13g0329 . 23 315 MRS2 Gene Family AT5G09720 57.8 1.2e-77 287.3
Lcy12g2154 . 33 291 MRS2 Gene Family AT5G09720 60.2 9.7e-75 277.7
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G80900 83.0 1.7e-200 696.0
Lcy13g1649 . 1 401 MRS2 Gene Family AT1G80900 51.4 8.8e-104 374.8
Lcy5g1032 . 16 466 MRS2 Gene Family AT5G22830 67.1 3.0e-155 545.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41