Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1034 | ATGTCTCGACGTGGTGGTGGTGGTGGTGGCGGCGGCCGTGGCTCTGGTCGTGGAGGACAGCCCTCTCCGGCTATATCTCGTGGCGGCGCCAGCGGCGGCGGTGGTAGAGGAGGCGGAGGGCGTGGAGGTCGCGGCGGAGGGGGAAGAGATGGAGGTAGGGGAGGTCACTCGGCTCCTCAACAGTTTCATTCTCCATCTCCTCAGCCAACTCCGGTTCCTTCCCGTCCTCCTCCTCAGCCTTCAACGGTAGTTTCTTCTAATCCTTCCTCTTCTGGAACTGTTGCTCCCTCGCAGCCAGAGGCATCTTCCTCAAGGATTGAAGCACAGGTGGAGAAGTTGACATTGGCGCCAGAGAAAGTTCCGCCGTCTTCATCTAAGGCTCTCGCTGTGGTGAAGAGGCCGGGATATGGAACCGTGGGTTACAAAGTTGTTGTTCGAGCCAATCATTTTCTGGTTGAAGTGGCAGATAAAGATCTCTACCACTATGATGTTTCTATCACACCGGAGGTTTTGTCCAAGAAGGTCTGTCGAGATATAATAAACCAGCTCGTAACAATGTATCGAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTGAACTTCCATTTACCTCTAAAGAGTTCATGATTAAGTTAGTCCGTGAAGAGAATGTTGGCTCTTCCAAACCAACAAGAAAGGATCGTGAATTCAGAGTTTCTATCAAATATGCTTCTAAGCCAGACCTCCATCACCTACAACAGTTTCTACGTGGACGGCAGAGAGATGCTCCACAAGAAACTATCCAACTTCTTGATGTTGTTTTGAGAAGTAAACCATCATCGAGATCATTTTATGAACCAATACGTGTGACGGACTATGTTGCTAAACACTTCAATCTAAGGAATTTCACGAGGCCATTATCGGATCAGGACTGTAGGAAGATAAAACGAGTACTCAGAGGAGTGAAGGTGGCCTTAACATATAGAGAGCATGCCAGGACCTACAAAATTACTGGAATATCGTCAGAGCCGATAAACAAATTAATGTTTACTCTTGATGACCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTACTCAAATTTCCATCTCTACCTGCTCTACAAGCTGGTAACAATGCAAAACCCATCTATTTGCCTATGGAGGTTTGTACAATTGTTGCTGGGCAGAGATATACTAAAAAATTGAATGAACGCCAAGTAACTGAGCTGTTAAGAGCGACTTGTCAGCGGCCTAAGGATCGTCTAGAGAGTATAGAGAAGATGGTTGAAAGGAATGATTATTCTAAAGATGAAATTGTTGAGGATTTTGGCATTCAAGTTCACAAACAGTTATGTGATGTTGATGCTCGAGTTTTGCCATCTCCACTGCTCAAATATCATGACACAGGCAAAGAATCAAGAGTTGACCCAAGGATGGGTCAGTGGAATATGATAAATAAGAAAATGGTCAATGGTGGCAGAGTAGATTATTGGACATGTGTGAATTTCTCTTCACGGTTGGATCCCGGCCTGCCCGCTGAATTTTGTCTACAATTGGTTAACATGTGCAATAGCAAGGGAATGGCTTTCAACCCTACTCCATGTTTTCCCATACATACTGCACATGCGAATCAAATTGATAGTGCACTTAGAGAGATCCATAGTCAGTCTGTAAGAAGTTTGGGGCCTCAGAGCAAGTCTCTTCAGTTGCTCATCATTATTTTACCTGACGTTACTGGTTCCTATGGGAAGATTAAGCGGATTTGTGAGACTGAGCTTGGAATCGTTTCACAATGTTGCCAGCCTAGGCAGGCCCAGAAGCTGAACAAGCAATATTTTGAAAATGTTGCCCTTAAAATCAACGTTAAGGTTGGTGGAAGGAACAATGTCTTAAGTGATGCTATTCAGCGTAAGATTCCACTTGTTACGGATCGACCTACGATCATCTTTGGTGCGGATGTTACACACCCGCAGCCAGGAGAGGACTCTAGTCCTTCAATAGCGGCGGTTGTTGCCTCAATGGACTGGCCCGAGATAACAAAGTATAGAGGCATTGTTTCAGCCCAGACTCATCGTGAAGAAATTATCCAAGATTTGTATAAACAAAATCAAGATCCTCAGAGGGGGTTGGTGCATGCAGGGATGATTAGAGATGGTGTAAGTGAAGGACAGTTTAGTCAAGTTCTGCTCTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCACTTGAGGAGGGCTACCAACCTCCAGTAACCTTTATAGTGGTTCAAAAGAGGCATCACACTCGTCTTTTTCCGACCAGTCGGGATACTGACCGTAGTGGAAACATTCTTCCAGGTACTGTTGTCGATACGAAAATCTGTCATCCAACTGAATTTGATTTCTATTTGAACAGCCATGCTGGCATACAGGGAACAAGTAGGCCAACACATTATCACGTTCTATTCGATGAAAACAATTTCAGTGCAGATGCAATGCAAATGCTCACTAATAATCTATGCTACACGTATGCAAGGTGCACACGATCCGTTTCCATCGTTCCACCAGCCTACTATGCTCATCTAGCAGCATTTCGTGCTCGTTATTACATGGAGGGCGATTCATCTGATAGTGGTTCCACGAGTTCGGGTGGTGGGAATGTAGAGATTCAAGCCTTGCCAAGCATAAAAGAGAATGTGAAGGATGTGATGTTTTACTGCTGA | 2733 | 44.97 | MSRRGGGGGGGGRGSGRGGQPSPAISRGGASGGGGRGGGGRGGRGGGGRDGGRGGHSAPQQFHSPSPQPTPVPSRPPPQPSTVVSSNPSSSGTVAPSQPEASSSRIEAQVEKLTLAPEKVPPSSSKALAVVKRPGYGTVGYKVVVRANHFLVEVADKDLYHYDVSITPEVLSKKVCRDIINQLVTMYRESHLGGRFLAYDGGKSVYVAGELPFTSKEFMIKLVREENVGSSKPTRKDREFRVSIKYASKPDLHHLQQFLRGRQRDAPQETIQLLDVVLRSKPSSRSFYEPIRVTDYVAKHFNLRNFTRPLSDQDCRKIKRVLRGVKVALTYREHARTYKITGISSEPINKLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPALQAGNNAKPIYLPMEVCTIVAGQRYTKKLNERQVTELLRATCQRPKDRLESIEKMVERNDYSKDEIVEDFGIQVHKQLCDVDARVLPSPLLKYHDTGKESRVDPRMGQWNMINKKMVNGGRVDYWTCVNFSSRLDPGLPAEFCLQLVNMCNSKGMAFNPTPCFPIHTAHANQIDSALREIHSQSVRSLGPQSKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLSDAIQRKIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEITKYRGIVSAQTHREEIIQDLYKQNQDPQRGLVHAGMIRDGVSEGQFSQVLLYEMDAIRKACASLEEGYQPPVTFIVVQKRHHTRLFPTSRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQALPSIKENVKDVMFYC | 910 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 20064266 | 20071288 | - | Maker00004732 | Lcy5g1034 | 632849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1034 | 910 | Gene3D | paz domain | 285 | 408 | - | - | |
Lcy5g1034 | 910 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 283 | 896 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Lcy5g1034 | 910 | CDD | PAZ_argonaute_like | 290 | 403 | - | - | |
Lcy5g1034 | 910 | Pfam | PAZ domain | 314 | 420 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lcy5g1034 | 910 | SUPERFAMILY | Ribonuclease H-like | 575 | 876 | IPR012337 | - | |
Lcy5g1034 | 910 | SMART | PAZ_2_a_3 | 293 | 426 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lcy5g1034 | 910 | Pfam | Argonaute linker 2 domain | 430 | 476 | IPR032472 | - | |
Lcy5g1034 | 910 | SMART | Piwi_a_2 | 580 | 875 | IPR003165 | GO:0003676(InterPro) | |
Lcy5g1034 | 910 | MobiDBLite | consensus disorder prediction | 1 | 105 | - | - | |
Lcy5g1034 | 910 | CDD | Piwi_ago-like | 448 | 874 | IPR045246 | - | |
Lcy5g1034 | 910 | SUPERFAMILY | PAZ domain | 287 | 444 | IPR036085 | GO:0005515(InterPro) | |
Lcy5g1034 | 910 | Gene3D | - | 648 | 910 | IPR036397 | GO:0003676(InterPro) | |
Lcy5g1034 | 910 | Pfam | Piwi domain | 581 | 874 | IPR003165 | GO:0003676(InterPro) | |
Lcy5g1034 | 910 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - | |
Lcy5g1034 | 910 | FunFam | Argonaute 10 | 468 | 642 | - | - | |
Lcy5g1034 | 910 | Pfam | Mid domain of argonaute | 487 | 565 | IPR032473 | - | |
Lcy5g1034 | 910 | Gene3D | - | 468 | 642 | - | - | |
Lcy5g1034 | 910 | ProSiteProfiles | PAZ domain profile. | 292 | 404 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lcy5g1034 | 910 | ProSiteProfiles | Piwi domain profile. | 580 | 875 | IPR003165 | GO:0003676(InterPro) | |
Lcy5g1034 | 910 | Pfam | N-terminal domain of argonaute | 142 | 278 | IPR032474 | - | |
Lcy5g1034 | 910 | MobiDBLite | consensus disorder prediction | 64 | 83 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g1034 | Lcy-Chr5:20064266 | Lcy5g2573 | Lcy-Chr5:48432559 | 2.73e-317 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g1034 | K11593 | - | csv:116403995 | 1397.88 |