Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1034 ATGTCTCGACGTGGTGGTGGTGGTGGTGGCGGCGGCCGTGGCTCTGGTCGTGGAGGACAGCCCTCTCCGGCTATATCTCGTGGCGGCGCCAGCGGCGGCGGTGGTAGAGGAGGCGGAGGGCGTGGAGGTCGCGGCGGAGGGGGAAGAGATGGAGGTAGGGGAGGTCACTCGGCTCCTCAACAGTTTCATTCTCCATCTCCTCAGCCAACTCCGGTTCCTTCCCGTCCTCCTCCTCAGCCTTCAACGGTAGTTTCTTCTAATCCTTCCTCTTCTGGAACTGTTGCTCCCTCGCAGCCAGAGGCATCTTCCTCAAGGATTGAAGCACAGGTGGAGAAGTTGACATTGGCGCCAGAGAAAGTTCCGCCGTCTTCATCTAAGGCTCTCGCTGTGGTGAAGAGGCCGGGATATGGAACCGTGGGTTACAAAGTTGTTGTTCGAGCCAATCATTTTCTGGTTGAAGTGGCAGATAAAGATCTCTACCACTATGATGTTTCTATCACACCGGAGGTTTTGTCCAAGAAGGTCTGTCGAGATATAATAAACCAGCTCGTAACAATGTATCGAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTGAACTTCCATTTACCTCTAAAGAGTTCATGATTAAGTTAGTCCGTGAAGAGAATGTTGGCTCTTCCAAACCAACAAGAAAGGATCGTGAATTCAGAGTTTCTATCAAATATGCTTCTAAGCCAGACCTCCATCACCTACAACAGTTTCTACGTGGACGGCAGAGAGATGCTCCACAAGAAACTATCCAACTTCTTGATGTTGTTTTGAGAAGTAAACCATCATCGAGATCATTTTATGAACCAATACGTGTGACGGACTATGTTGCTAAACACTTCAATCTAAGGAATTTCACGAGGCCATTATCGGATCAGGACTGTAGGAAGATAAAACGAGTACTCAGAGGAGTGAAGGTGGCCTTAACATATAGAGAGCATGCCAGGACCTACAAAATTACTGGAATATCGTCAGAGCCGATAAACAAATTAATGTTTACTCTTGATGACCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTACTCAAATTTCCATCTCTACCTGCTCTACAAGCTGGTAACAATGCAAAACCCATCTATTTGCCTATGGAGGTTTGTACAATTGTTGCTGGGCAGAGATATACTAAAAAATTGAATGAACGCCAAGTAACTGAGCTGTTAAGAGCGACTTGTCAGCGGCCTAAGGATCGTCTAGAGAGTATAGAGAAGATGGTTGAAAGGAATGATTATTCTAAAGATGAAATTGTTGAGGATTTTGGCATTCAAGTTCACAAACAGTTATGTGATGTTGATGCTCGAGTTTTGCCATCTCCACTGCTCAAATATCATGACACAGGCAAAGAATCAAGAGTTGACCCAAGGATGGGTCAGTGGAATATGATAAATAAGAAAATGGTCAATGGTGGCAGAGTAGATTATTGGACATGTGTGAATTTCTCTTCACGGTTGGATCCCGGCCTGCCCGCTGAATTTTGTCTACAATTGGTTAACATGTGCAATAGCAAGGGAATGGCTTTCAACCCTACTCCATGTTTTCCCATACATACTGCACATGCGAATCAAATTGATAGTGCACTTAGAGAGATCCATAGTCAGTCTGTAAGAAGTTTGGGGCCTCAGAGCAAGTCTCTTCAGTTGCTCATCATTATTTTACCTGACGTTACTGGTTCCTATGGGAAGATTAAGCGGATTTGTGAGACTGAGCTTGGAATCGTTTCACAATGTTGCCAGCCTAGGCAGGCCCAGAAGCTGAACAAGCAATATTTTGAAAATGTTGCCCTTAAAATCAACGTTAAGGTTGGTGGAAGGAACAATGTCTTAAGTGATGCTATTCAGCGTAAGATTCCACTTGTTACGGATCGACCTACGATCATCTTTGGTGCGGATGTTACACACCCGCAGCCAGGAGAGGACTCTAGTCCTTCAATAGCGGCGGTTGTTGCCTCAATGGACTGGCCCGAGATAACAAAGTATAGAGGCATTGTTTCAGCCCAGACTCATCGTGAAGAAATTATCCAAGATTTGTATAAACAAAATCAAGATCCTCAGAGGGGGTTGGTGCATGCAGGGATGATTAGAGATGGTGTAAGTGAAGGACAGTTTAGTCAAGTTCTGCTCTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCACTTGAGGAGGGCTACCAACCTCCAGTAACCTTTATAGTGGTTCAAAAGAGGCATCACACTCGTCTTTTTCCGACCAGTCGGGATACTGACCGTAGTGGAAACATTCTTCCAGGTACTGTTGTCGATACGAAAATCTGTCATCCAACTGAATTTGATTTCTATTTGAACAGCCATGCTGGCATACAGGGAACAAGTAGGCCAACACATTATCACGTTCTATTCGATGAAAACAATTTCAGTGCAGATGCAATGCAAATGCTCACTAATAATCTATGCTACACGTATGCAAGGTGCACACGATCCGTTTCCATCGTTCCACCAGCCTACTATGCTCATCTAGCAGCATTTCGTGCTCGTTATTACATGGAGGGCGATTCATCTGATAGTGGTTCCACGAGTTCGGGTGGTGGGAATGTAGAGATTCAAGCCTTGCCAAGCATAAAAGAGAATGTGAAGGATGTGATGTTTTACTGCTGA 2733 44.97 MSRRGGGGGGGGRGSGRGGQPSPAISRGGASGGGGRGGGGRGGRGGGGRDGGRGGHSAPQQFHSPSPQPTPVPSRPPPQPSTVVSSNPSSSGTVAPSQPEASSSRIEAQVEKLTLAPEKVPPSSSKALAVVKRPGYGTVGYKVVVRANHFLVEVADKDLYHYDVSITPEVLSKKVCRDIINQLVTMYRESHLGGRFLAYDGGKSVYVAGELPFTSKEFMIKLVREENVGSSKPTRKDREFRVSIKYASKPDLHHLQQFLRGRQRDAPQETIQLLDVVLRSKPSSRSFYEPIRVTDYVAKHFNLRNFTRPLSDQDCRKIKRVLRGVKVALTYREHARTYKITGISSEPINKLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPALQAGNNAKPIYLPMEVCTIVAGQRYTKKLNERQVTELLRATCQRPKDRLESIEKMVERNDYSKDEIVEDFGIQVHKQLCDVDARVLPSPLLKYHDTGKESRVDPRMGQWNMINKKMVNGGRVDYWTCVNFSSRLDPGLPAEFCLQLVNMCNSKGMAFNPTPCFPIHTAHANQIDSALREIHSQSVRSLGPQSKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLSDAIQRKIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEITKYRGIVSAQTHREEIIQDLYKQNQDPQRGLVHAGMIRDGVSEGQFSQVLLYEMDAIRKACASLEEGYQPPVTFIVVQKRHHTRLFPTSRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQALPSIKENVKDVMFYC 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20064266 20071288 - Maker00004732 Lcy5g1034 632849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1034 910 Gene3D paz domain 285 408 - -
Lcy5g1034 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 283 896 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lcy5g1034 910 CDD PAZ_argonaute_like 290 403 - -
Lcy5g1034 910 Pfam PAZ domain 314 420 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy5g1034 910 SUPERFAMILY Ribonuclease H-like 575 876 IPR012337 -
Lcy5g1034 910 SMART PAZ_2_a_3 293 426 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy5g1034 910 Pfam Argonaute linker 2 domain 430 476 IPR032472 -
Lcy5g1034 910 SMART Piwi_a_2 580 875 IPR003165 GO:0003676(InterPro)
Lcy5g1034 910 MobiDBLite consensus disorder prediction 1 105 - -
Lcy5g1034 910 CDD Piwi_ago-like 448 874 IPR045246 -
Lcy5g1034 910 SUPERFAMILY PAZ domain 287 444 IPR036085 GO:0005515(InterPro)
Lcy5g1034 910 Gene3D - 648 910 IPR036397 GO:0003676(InterPro)
Lcy5g1034 910 Pfam Piwi domain 581 874 IPR003165 GO:0003676(InterPro)
Lcy5g1034 910 MobiDBLite consensus disorder prediction 84 105 - -
Lcy5g1034 910 FunFam Argonaute 10 468 642 - -
Lcy5g1034 910 Pfam Mid domain of argonaute 487 565 IPR032473 -
Lcy5g1034 910 Gene3D - 468 642 - -
Lcy5g1034 910 ProSiteProfiles PAZ domain profile. 292 404 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy5g1034 910 ProSiteProfiles Piwi domain profile. 580 875 IPR003165 GO:0003676(InterPro)
Lcy5g1034 910 Pfam N-terminal domain of argonaute 142 278 IPR032474 -
Lcy5g1034 910 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1034 Lcy-Chr5:20064266 Lcy5g2573 Lcy-Chr5:48432559 2.73e-317 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1034 K11593 - csv:116403995 1397.88