Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1135 ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTCTGCCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACGACCCTTCTTCCTCCTCCTCTCCCTCCATTTCTCTCTCTTCTTCGTCTTCGTCTTCCTGCGACCGAGATTTGATCTCGAGAACCGTTCGATGCGTTACGGGTTTAATTCCTGAAGACGAATTTTTCGCTTCCCGATGCCTGCCTCTGTTCACGGAGATCGAGGCCTCGGCGAAGGAGGAAGAAGAAGGGGTTCGAGTTCGAGATCGTGAAAGGCAATATTTGGATATTAAAGAGGAGGATGAAGATATAGAAAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCTCTAATTTGGCTGATGGGAGCATGAATGTTTGTGTAAAGAAAGAAGAGATTAGCAGTGTGAAGAAAAGCTTCTCTAATTTTAACACTCAAGGAAGGTTTTGGATCCCAACGCCAGCACAGATCCTCGTCGGGCCGATGCAATTTGCTTGCTCCATCTGCAACAAGTCGTTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCGGAGTACAGAAAGGGCCCAGAATCCCTGAGAGGAACACAGCCAGCAGCAATGCTGAGGCTGCCATGTTATTGCTGCGCTCAGGGGTGCAAGAACAACATCAACCATCCAAGAGCCAAGCCATTGAAGGACTTTAGAACCCTCCAAACCCACTACAAAAGAAAGCATGGATCCAAGCCATTTATGTGCAGAAAATGTGGCAAAACTTTGGCTGTCAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGGAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAACGATCCCTCAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCTCGCTGCCCTCTTGATGCCTTTCAAGATGACAAAGAATGCCTCACTGGCTCTGATCGAGAAGATGAGTTCACTCATTAG 1014 46.25 MGLRNHMAEENIFCLQSPTFIEWLKPHDPSSSSSPSISLSSSSSSSCDRDLISRTVRCVTGLIPEDEFFASRCLPLFTEIEASAKEEEEGVRVRDRERQYLDIKEEDEDIEKVEVGLHIGLPNVGDVSNLADGSMNVCVKKEEISSVKKSFSNFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPRCPLDAFQDDKECLTGSDREDEFTH 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24245473 24247918 - Maker00037197 Lcy5g1135 632950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1135 337 Gene3D Classic Zinc Finger 255 313 - -
Lcy5g1135 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Lcy5g1135 337 FunFam Zinc finger protein WIP2 228 310 - -
Lcy5g1135 337 Gene3D Classic Zinc Finger 174 197 - -
Lcy5g1135 337 Pfam Zinc finger, C2H2 type 175 194 IPR013087 -
Lcy5g1135 337 PANTHER ZINC FINGER PROTEIN WIP2 17 328 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Lcy5g1135 337 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Lcy5g1135 337 SMART c2h2final6 259 279 IPR013087 -
Lcy5g1135 337 SMART c2h2final6 222 254 IPR013087 -
Lcy5g1135 337 SMART c2h2final6 175 197 IPR013087 -
Lcy5g1135 337 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 258 282 - -
Lcy5g1135 337 SUPERFAMILY beta-beta-alpha zinc fingers 166 198 IPR036236 -
Lcy5g1135 337 SUPERFAMILY beta-beta-alpha zinc fingers 244 279 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1915 Lcy-Chr3:46395653 Lcy5g1135 Lcy-Chr5:24245473 1.09E-104 dispersed
Lcy5g1135 Lcy-Chr5:24245473 Lcy8g2102 Lcy-Chr8:47205856 7.94E-100 dispersed
Lcy10g0910 Lcy-Chr10:28817782 Lcy5g1135 Lcy-Chr5:24245473 6.39E-105 wgd
Lcy2g2121 Lcy-Chr2:42314412 Lcy5g1135 Lcy-Chr5:24245473 1.52E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20106 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1135 - - - 0.0