Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g1143 | ATGGAAATCTCTGTTACTTTGCTTCTGTTTGTCACTTTTCTCTTACTTTGCCTTTACCTTCTCTTCTTTACTTCATCAAAGAAATCTCAAAGCCATGGAGGTTTCAGACACTTCCCCATAGTGGGAATCCTGCCGGTGTTCTTATTGAATCGACACCGTTTTCTTGACTGGACGACGGAGGTTCTCAGCAACTGCCGGACGAAAACGGCGGTCTTCCGGCGGCCAGGGCAGGTGAACGGCGTCGTCACGGCGAACCCACTTGTGGTCGAGCACATACTCAAAACCCATTTCGAGAATTATCCGAAAGGGGAACACTTCATTTCGCCGTTGGAGGATTTTTTGGGGCGTGGAATCTTCAACTCCGACGGCGAAATTTGGAGGGTTCAGAGGAAAACGGCCAGTTATGAGTTCAACACTAAATCGCTGAGGAATTTCATTATGGAGAATGTTAGGGTTGAGACACAGACGAGGCTGCTTCCTATTTTGGAAAGCGCTTCTGAAACGGGGCGGATTTTGGATCTGCAGGACGTTTTGGAGCGATTTTCGTTTGATAATGTTTGTAAATTGGCTTTTGATTTCGACCCTGCTTGTCTCGGCGGCGACGGCACTGCCGGCGCCGAGTTCATGCGCGCTTTTGAGAACGCCACCACCCTCATCTTCGGCAGATTGATGTATGCTATTCCAAATTGGTACAAAGTGAAAAAATTTCTGGACATGGGATCAGAGAGAACCCTGAAAGAATCCATCGCCACAGTGAAGAAATTTGCAGACAACATCATACGCTCAAGAATGGAACAGAAGATGACAACCCATATCAAAAAGGATCAAGATTTATTATCTCGCTTCATGGAAGACCAACACAACTCTCCAGAATTCCTCCGAGACATTATCATAAGCTTCATCCTCGCCGGCCGAGACTCCACATCTTCCGCTCTAACATGGTTCTTCTGGATCTTATCCTCTCGACCAGACATCCAACAAAAAATCCTCGTAGAACTCCGAATGATTCGGTCAAAAACCGGTAAGCAAATCGGAGAAATGTACAGCTTCGACGAGCTCCGAGACATGCACTATCTTCAAGCAGCACTATCCGAGACTCTACGGTTGTACCCACCAGTGCCAATGGACTCAAAATCCTGTCGAAGCAACGATGTATTACCGGACGGGACGGTCGTCGGGAAGAGGTGGATTGTAACGTATCATACTTATGCAATGGGGAGGATGGAGAGCATATGGGGGGAGAATTATGGGGAATTTTTGCCGGAGAGGTGGTTGGAGAACGGGGTTTGTCGAACGGAGAGCCCATTTCGATTCCCGACCTTTCATGCGGGTCCGAGGATGTGTTTGGGAAAGGATATGGCTTATATTCAGATGAAGTCCATAGTTGCGGCTGTGATCGAGAAGTTTGAAGTGGAAATGATAGAGAAGAAGAAGAGTCCAAAGTATTTGTTGTCATTGACATTGAGGATGGAGAATGGGTTGGAGGTGATGGTAAAAAAGAGAGTCAAAAGAGTGATGCGTACTTGTGGCGATCATATTGAATAA | 1545 | 46.8 | MEISVTLLLFVTFLLLCLYLLFFTSSKKSQSHGGFRHFPIVGILPVFLLNRHRFLDWTTEVLSNCRTKTAVFRRPGQVNGVVTANPLVVEHILKTHFENYPKGEHFISPLEDFLGRGIFNSDGEIWRVQRKTASYEFNTKSLRNFIMENVRVETQTRLLPILESASETGRILDLQDVLERFSFDNVCKLAFDFDPACLGGDGTAGAEFMRAFENATTLIFGRLMYAIPNWYKVKKFLDMGSERTLKESIATVKKFADNIIRSRMEQKMTTHIKKDQDLLSRFMEDQHNSPEFLRDIIISFILAGRDSTSSALTWFFWILSSRPDIQQKILVELRMIRSKTGKQIGEMYSFDELRDMHYLQAALSETLRLYPPVPMDSKSCRSNDVLPDGTVVGKRWIVTYHTYAMGRMESIWGENYGEFLPERWLENGVCRTESPFRFPTFHAGPRMCLGKDMAYIQMKSIVAAVIEKFEVEMIEKKKSPKYLLSLTLRMENGLEVMVKKRVKRVMRTCGDHIE | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 24565175 | 24568133 | - | Maker00008910 | Lcy5g1143 | 632958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g1143 | 514 | PRINTS | E-class P450 group I signature | 292 | 309 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | E-class P450 group I signature | 360 | 378 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | E-class P450 group I signature | 312 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | E-class P450 group I signature | 438 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | E-class P450 group I signature | 448 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | CDD | CYP86A | 68 | 494 | - | - | |
| Lcy5g1143 | 514 | SUPERFAMILY | Cytochrome P450 | 31 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PANTHER | CYTOCHROME P450 | 17 | 494 | - | - | |
| Lcy5g1143 | 514 | PRINTS | P450 superfamily signature | 448 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | P450 superfamily signature | 439 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | P450 superfamily signature | 361 | 372 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | PRINTS | P450 superfamily signature | 303 | 320 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | Gene3D | Cytochrome P450 | 18 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | Pfam | Cytochrome P450 | 73 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g1143 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 441 | 450 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0814 | Lcy-Chr5:12666315 | Lcy5g1143 | Lcy-Chr5:24565175 | 3.80e-315 | dispersed | |
| Lcy5g0815 | Lcy-Chr5:12712224 | Lcy5g1143 | Lcy-Chr5:24565175 | 0 | dispersed | |
| Lcy5g0816 | Lcy-Chr5:12753530 | Lcy5g1143 | Lcy-Chr5:24565175 | 3.90E-120 | dispersed | |
| Lcy5g0817 | Lcy-Chr5:12756864 | Lcy5g1143 | Lcy-Chr5:24565175 | 1.78E-133 | dispersed | |
| Lcy5g1119 | Lcy-Chr5:23354334 | Lcy5g1143 | Lcy-Chr5:24565175 | 5.75E-119 | dispersed | |
| Lcy5g1143 | Lcy-Chr5:24565175 | Lcy7g1103 | Lcy-Chr7:11965621 | 1.81E-27 | dispersed | |
| Lcy13g1061 | Lcy-Chr13:23713799 | Lcy5g1143 | Lcy-Chr5:24565175 | 1.14E-98 | wgd | |
| Lcy5g0812 | Lcy-Chr5:12554633 | Lcy5g1143 | Lcy-Chr5:24565175 | 4.56e-312 | wgd |
Pathway information