Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1147 CCTGTAGATAGCAAGAGCAAATTGTCGGCCGGTGTGATAGTATTGATATGTTTAGGAGGAGCAGCTGCCATAGCCGCATTGGCATTGCTGCTATGGAAATTCAGAGGCAAAATGAAAGGTTCACCAGCTGCTGCTTCGAGTAAACCTCAGACCAACACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAATTTTCAGCAGAACTTTCAGGGCCATACGAATTAAGCATAGAAGGAGGGCAACTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCTGTGGCTACTGACAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGTTTTGGCCCGGTATACAGGGGAAAGCTTCCAAGTGGACAAGAAATTGCCGTGAAGAGGCTCTCAGTTCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATCATACTGATAGGAAAGTTGCAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAATAAGCAGGCTCTACTAGATTGGAAGAAACGGGTGTCAATCATCCAAGGAATTGCACGAGGGTTGCTGTACCTTCATAGAGACTCTACACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAATATTTTGTTGGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAACGAAGCGACAAATACAATTCGAGTCGTTGGCACATACGGTTACATGGCTCCAGAGTATGCAATGGAAGGTCTATTTTCAGTGAAATCAGATGTCTATAGTTTTGGCGTGTTATTATTAGAATTGATATGTGGTCGGAGGAACACTAGCTTTCGCTCAACCGAATACTTAACCCTTATTGGCTATGCTTGGAATCTTTGGAATGATGGAAGATCGGTTGAACTCCTCGACCCGTCTATTCGTGATTCATCGGTCGAGAATGAAGTATTGAAATGCATACATGTAGCAATGCTGTGTGTACAAGACTCCCCAGCTTATAGACCAACACTGCAGTCCGTAGTGCTAATGCTGGAGAGTGAATCTACATCTCTGCCACAGCCAAGACAACCCACCTATACTTCCACAAGAGCCTCCATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACGTAACGGTAACAATGTTGGATGGTAGATAG 1266 43.68 PVDSKSKLSAGVIVLICLGGAAAIAALALLLWKFRGKMKGSPAAASSKPQTNTEVPMFDLSKSREFSAELSGPYELSIEGGQLSGPDLPMFNFNCIAVATDNFSEENKLGQGGFGPVYRGKLPSGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRVSIIQGIARGLLYLHRDSTLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLIGYAWNLWNDGRSVELLDPSIRDSSVENEVLKCIHVAMLCVQDSPAYRPTLQSVVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24670694 24672425 + Maker00008933 Lcy5g1147 632962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1147 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1147 421 Pfam Domain of unknown function (DUF3403) 376 421 IPR021820 GO:0004674(InterPro)
Lcy5g1147 421 SUPERFAMILY Protein kinase-like (PK-like) 88 398 IPR011009 -
Lcy5g1147 421 Pfam Protein tyrosine and serine/threonine kinase 106 371 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1147 421 Gene3D Transferase(Phosphotransferase) domain 1 179 393 - -
Lcy5g1147 421 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 69 178 - -
Lcy5g1147 421 Gene3D Phosphorylase Kinase; domain 1 77 178 - -
Lcy5g1147 421 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 179 382 - -
Lcy5g1147 421 CDD STKc_IRAK 109 375 - -
Lcy5g1147 421 SMART serkin_6 103 374 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1147 421 ProSiteProfiles Protein kinase domain profile. 103 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1147 421 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 389 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1147 Lcy-Chr5:24670694 Lcy5g1955 Lcy-Chr5:42395034 2.90E-130 dispersed
Lcy1g0402 Lcy-Chr1:3574770 Lcy5g1147 Lcy-Chr5:24670694 9.41E-296 wgd
Lcy13g1270 Lcy-Chr13:29861599 Lcy5g1147 Lcy-Chr5:24670694 2.25E-76 wgd
Lcy3g0680 Lcy-Chr3:24794756 Lcy5g1147 Lcy-Chr5:24670694 7.37E-35 wgd
Lcy3g0138 Lcy-Chr3:3500292 Lcy5g1147 Lcy-Chr5:24670694 3.54E-53 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy5g1147 Lcy-Chr5:24670694 8.35E-59 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy6g1627 Lcy-Chr6:29573455 4.77E-63 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy6g1266 Lcy-Chr6:15602742 2.44E-112 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy9g0416 Lcy-Chr9:11658724 1.54E-82 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy9g0283 Lcy-Chr9:7252774 1.03E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65932 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1147 - - - 0.0