Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1148 ATGTCCGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCCATCCAACGGTGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAGTTGCCCCTTCCTGAAAATCCTTCCCTAATCCCTAACCATGCCCTCAGAAGCTTAATTTCAAATTTCAACCCGTTTCTCCCTCATCCGCCGCCCCAAACCCTAATCTCGATTCTCGTCTCTCCTTCTTCTTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTATGCGGAGAAGATTGACCGAGTCCGGTGCCGTCTCGGCCATTCTTAAATGCGTCGGTTCTGACGATCCGAGCCTCCAAGAGAAGGCTCTGTCGCTGTTGTTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAAGGGCTATTGGCATCATCGTGGCTGCTCTTCAAGCCAGGTCCCCCGATTGCAAAGCCGTTGTGGCCACGATGCTGACGAGCTTAGCCGTGGTGGAGGTTAACAAGGCTACGATTGGGGCTTATCCCTACGCGATTCGTTCTCTTGTTTGTCTCTTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCAGAGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCGAATTCTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTGTGGCCAAGTGTAGGGAAGGTCGAGAAGAGATGCAACGGTTCAATGGATGTGTGGAGATTTTGGGACGTGTGTTGAGAATTGGAGCCCCTAGAGGAGTTCAATATGCTCTTCTAACTCTGAGTTCTCTCTGTTGCCACAGCGAGCGAATGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAACGCTGCAAATTTGATTCATATACTGCGAGGAAACAACACATGA 1029 50.73 MSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPFLPHPPPQTLISILVSPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAILKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAERAIGIIVAALQARSPDCKAVVATMLTSLAVVEVNKATIGAYPYAIRSLVCLLRNGNNREQKEAATALYAICSFPENRVRAVECGAVPILLKIANSGLDRAVEVLGLVAKCREGREEMQRFNGCVEILGRVLRIGAPRGVQYALLTLSSLCCHSERMCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24682916 24683944 + Maker00008920 Lcy5g1148 632963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1148 342 CDD RING-Ubox_PUB 1 36 IPR045210 -
Lcy5g1148 342 FunFam RING-type E3 ubiquitin transferase 1 59 - -
Lcy5g1148 342 Gene3D - 246 342 IPR011989 -
Lcy5g1148 342 Gene3D - 64 245 IPR011989 -
Lcy5g1148 342 SMART arm_5 177 218 IPR000225 GO:0005515(InterPro)
Lcy5g1148 342 SMART arm_5 95 135 IPR000225 GO:0005515(InterPro)
Lcy5g1148 342 SMART arm_5 136 176 IPR000225 GO:0005515(InterPro)
Lcy5g1148 342 SMART arm_5 256 297 IPR000225 GO:0005515(InterPro)
Lcy5g1148 342 SMART Ubox_2 1 55 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1148 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 58 IPR013083 -
Lcy5g1148 342 Pfam U-box domain 1 55 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1148 342 SUPERFAMILY RING/U-box 1 55 - -
Lcy5g1148 342 SUPERFAMILY ARM repeat 64 337 IPR016024 -
Lcy5g1148 342 ProSiteProfiles U-box domain profile. 1 62 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1148 342 PANTHER U BOX DOMAIN-CONTAINING 1 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1148 Lcy-Chr5:24682916 Lcy5g1804 Lcy-Chr5:40796872 6.06E-36 dispersed
Lcy1g0403 Lcy-Chr1:3588172 Lcy5g1148 Lcy-Chr5:24682916 5.22E-234 wgd
Lcy4g1406 Lcy-Chr4:34663840 Lcy5g1148 Lcy-Chr5:24682916 2.97E-29 wgd
Lcy5g1148 Lcy-Chr5:24682916 Lcy7g1923 Lcy-Chr7:44780792 9.82E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1148 K27970 - csv:101213883 583.563