Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1179 ATGCAAGACAGTAAGCCTCCAATGCTTAAGTCAGAAAATGGAAGAGGAGAGCAAGAGAGTAAGAGGGAGAGAGTCGAGGAATTCGGGTGGAACCGGGGTGCCCAAGAGGCGGTAGGGACCATACGGAGCCAGACGGGCTCGACCCGTGCAGGTGGGTCGAGGGTCAGCCTCGGCCCCGAGGCAGGACCATGGGCCTCGGCCTTGGGCCGAGCAGGGGTCGGGCTCGGTCTTGGCCTGACCGACTGGCCCGTTTCGCCCCCGGGGTCCATCCTCCAGTCGATTTCTCTCTCTGCTTTGATCCTTCCAGTTCTCGCCGAAGTGATCGTTCATGCAGCGGATTGGTTTCGTGTGGTGGGTTGCGGGAAAAATGGTGGCTTGTTAATGGCGAGTGGTGAGGATTGGGGCAGCAATCCTTGCTTCATAAGCTGTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTACCCGTCATGTTTAGGCAAGTATTTGTTCTGCTGGCTACGTATTTGGGAGGAGGCACACTTTGTTTCTTCCTTGTTCGGGATCAGATCAGTGGAAAGAAAACAAACGGGATTGTTGATGCCCTTTACTTTTGTGTTGTGACAATGACCACGGTTGGATATGGAGATCTTGTACCTAGTAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAACTCCTTCTGGTAAAAGCCATGTTCATGAGCAAAAAGATCAGCTCTAGTGAGATCCTTCAGGAATCGGAGGCTCACAAACGCAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGTTCTCATCGTTGTTGGAACTCTTTTCTTGATTGTGGTTGAGAAGCTAGACATCACTGATGCATTTTATTGCGTTTGTTCCACAATCACAACTCTTGGCTATGGGGATGAGAGCTTCTCTACAACGGCCGGTCGTGTTTTTGCTGCCATTTGGATAATGAGCAGCACTATATGCTTGGCACAGTTCTTTCTGTACCTCGCAGAATTACACACAGAAGGAGGCAGAAATCACTCGTGA 1107 49.5 MQDSKPPMLKSENGRGEQESKRERVEEFGWNRGAQEAVGTIRSQTGSTRAGGSRVSLGPEAGPWASALGRAGVGLGLGLTDWPVSPPGSILQSISLSALILPVLAEVIVHAADWFRVVGCGKNGGLLMASGEDWGSNPCFISCPILIRGNLSREENLPVMFRQVFVLLATYLGGGTLCFFLVRDQISGKKTNGIVDALYFCVVTMTTVGYGDLVPSSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQELLLVKAMFMSKKISSSEILQESEAHKRKYKFIMTGILLWVLIVVGTLFLIVVEKLDITDAFYCVCSTITTLGYGDESFSTTAGRVFAAIWIMSSTICLAQFFLYLAELHTEGGRNHS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26404189 26408895 + Maker00000045 Lcy5g1179 632994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1179 368 MobiDBLite consensus disorder prediction 37 52 - -
Lcy5g1179 368 Gene3D - 259 362 - -
Lcy5g1179 368 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 120 216 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Lcy5g1179 368 SUPERFAMILY Voltage-gated potassium channels 158 254 - -
Lcy5g1179 368 PRINTS Two pore domain K+ channel signature 203 231 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy5g1179 368 PRINTS Two pore domain K+ channel signature 320 329 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy5g1179 368 SUPERFAMILY Voltage-gated potassium channels 268 361 - -
Lcy5g1179 368 Gene3D - 158 252 - -
Lcy5g1179 368 MobiDBLite consensus disorder prediction 1 56 - -
Lcy5g1179 368 MobiDBLite consensus disorder prediction 10 30 - -
Lcy5g1179 368 Pfam Ion channel 288 359 IPR013099 -
Lcy5g1179 368 Pfam Ion channel 167 247 IPR013099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1179 Lcy-Chr5:26404189 Lcy9g1112 Lcy-Chr9:35050265 9.27E-83 dispersed
Lcy5g1179 Lcy-Chr5:26404189 Lcy5g1368 Lcy-Chr5:32561668 1.72E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1179 K05389 - csv:101214791 358.992