Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1196 ATGGCCAATCCCCCACTCGACCACACCGCCTTATCCACCTCTTCATCTTTTTCTAATTTCCATGGAATTCACCACAACTCTTCTGCACCTTTCATGAATCAACAAGCCTCAGCTTTTGATTTTGGAGAGCTTCAAGAAGCCATAGTTTTGCAGGGGGTTAAGCTTCGAAATCATGAATCCAAATCGCCACATTTTCTCACAGGAAGGCCTGCTGCTACGCTTGAAATGTTTCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGTGGTTCAAATTCAAAGTCAGGAGGAGACAGCACAGATGATTCAGGATCAGCAAATATAAACAACACTCTCACAAGCAAAATAGAATTGGAATTGGAATTGGAACCTGAATCACCAATCAGCGCAAGGGCTTGTTCTTCAACTCCTCAAGGATTTGACCAAATTCATCATCTTCCAATTCAACATCTTCAAACAGACATGGAAGATGATGCCTTGACAACACAACCAAATCAATCCTCTCCCAAACAAAAGAGAAAAGGAGCTGGTTCAACATCAGAGAGGCAGCTCGATCCCAAGACACTGAGACGATTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTACATTCAGCAGCTAGAGTCCAGTAGAATCAAGCTTTCTCAGCTCGAACAAGACCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGAGCTTGTGGTGGCGTTATGGGTGGCAATATCAGCTCCGGAGCTGCAATATTTGATATGGAGTATGCGCGGTGGCTCGACGACGACCACCGTCTGATGGCGGAGCTGCGGACGGCGCTGCACGGGCATCTCCCGGACGGCGATCTCCGAGCAATAGTAGACAGTTACATCTCCCACTACGACGAAATATTTCACCTGAAAGGCGTGGCGGCGAAATCAGACGTCTTTCATCTGATCACCGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCCAAGCTGATAGAGATGCTTATTCCGCAATTAGACACATTGACAGAGCAACAAGCAGTGGGAATATGCAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTGTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATAATCACCATCGCCGGCACCACCGTCGTCGACGGCATCAACCATATGGCCGTCGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAATTGCGTCGAATATTGACAATCCGACAGGCTGCACGATGTTTTGTAGTGATTGGAGAGTACTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCAAGAGAGTAA 1401 48.04 MANPPLDHTALSTSSSFSNFHGIHHNSSAPFMNQQASAFDFGELQEAIVLQGVKLRNHESKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSNSKSGGDSTDDSGSANINNTLTSKIELELELEPESPISARACSSTPQGFDQIHHLPIQHLQTDMEDDALTTQPNQSSPKQKRKGAGSTSERQLDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGACGGVMGGNISSGAAIFDMEYARWLDDDHRLMAELRTALHGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAVGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTTVVDGINHMAVAAGKLSNLEGFIRQADMLRQQTLHQLRRILTIRQAARCFVVIGEYYGRLRALSSLWVSRPRE 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27254294 27259171 - Maker00008282 Lcy5g1196 633011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1196 466 Pfam Seed dormancy control 273 347 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy5g1196 466 MobiDBLite consensus disorder prediction 162 177 - -
Lcy5g1196 466 MobiDBLite consensus disorder prediction 178 193 - -
Lcy5g1196 466 MobiDBLite consensus disorder prediction 84 111 - -
Lcy5g1196 466 CDD bZIP_HBP1b-like 190 241 - -
Lcy5g1196 466 Coils Coil 209 236 - -
Lcy5g1196 466 Gene3D - 189 238 - -
Lcy5g1196 466 PANTHER TRANSCRIPTION FACTOR TGA9 158 466 - -
Lcy5g1196 466 MobiDBLite consensus disorder prediction 162 193 - -
Lcy5g1196 466 ProSiteProfiles DOG1 domain profile. 255 463 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy5g1196 466 Pfam bZIP transcription factor 190 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g1196 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g1196 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g1196 466 SMART brlzneu 186 252 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g1196 466 SUPERFAMILY Leucine zipper domain 190 231 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g1196 466 FunFam BZIP family transcription factor 189 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1196 Lcy-Chr5:27254294 Lcy7g0710 Lcy-Chr7:6731665 4.13E-107 dispersed
Lcy5g0638 Lcy-Chr5:7880978 Lcy5g1196 Lcy-Chr5:27254294 1.28E-96 transposed
Lcy8g1992 Lcy-Chr8:46218478 Lcy5g1196 Lcy-Chr5:27254294 1.66E-175 transposed
Lcy10g0967 Lcy-Chr10:31075962 Lcy5g1196 Lcy-Chr5:27254294 8.11E-101 wgd
Lcy5g0911 Lcy-Chr5:15586818 Lcy5g1196 Lcy-Chr5:27254294 3.10E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20107 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1196 K14431 - csv:101204604 753.821