Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1287 ATGGCGGTTGGTCGGCAGAGGTCGGCGGCAGCCGGTTGTCAGAGGTCGATGGTGACGATCGATGGTCGATCGACGTCATATGTGGTGCTGTTGGGATCCCATTCACATGGGTTGGAAGTTTCAGAAGCTGATCTTCAACGGGTGACTAATTCCCATTACAAATTGCTTGGATCCTTCTTGGGGAGTAATAAGAAGGCTAAAGATGCCATATTCTACTCCTACAAGAAGCATATCAATGGCTTTGCAGCAGTGCTGGAGGAGGAAGAGGCAGCTGAGCTTGCAAAGCACCCAGAAGTTGCAGTAGTTTTGGCGAATGAAATGATGGAATTACATACAACCCATTCATGGCGCTTCATGCATTTGGAAAGGAATGGTTCAGTTCCCTCCTCTGCTTGGAGAAACACCGCCAGATTTGGAGAAGACTCCATTATTGCCAACCTAGACTCTGGCGTGTGGCCTGAATCCATGAGCTTCAGAGATGATGGTATTACTAAACCTATTCCTTCCAAATGGAAAGGAAGCTGCGAGAATCCTCACAATAATGGATTTCACTGCAACAGAAAACTAATCGGAGCCAAATTCTTCAACGAGGGTTACATAGCGTACATGCGATCAATCAACGCAAATTTCGACACGTCCAGCGTCATCAACTCCACGCGTGACTACGCCGGCCACGGCTCCCACACGCTCTCCACGGCCGGCGGGAATTTTGTGGCGGCCAAGGACGTGTTCGGGTCCTCCGGGTTCGGGTCGGCCAAAGGCGGCTCGCCCAGGGCCCGACTGGCGCCCTACAAGGTGTGCTGGGGGGACAACGTCGGCTGCCCCACTGCCGACATCCTACAAGGCGTGGACGAGGCCATTCACGACGGCGTTGACGTCATCTCCTACTCCGTTGGCGGCGGTCCTTCTCCTTTCTACCAAGATGGCTTTGCCATCGCCTCCTTTCACGCCGTTAAGAACGGTATCTCCGTCGTCTGCTCCGCCGGCAACTCCGGCCCCGACCCTGGATCCGCCGTCAATCTTGCCCCTTGGATGCTCACTGTCGGTGCTAGCACTTTGGATCGCCGGATTGAAGCTGTTGTTCAGCTCAATAACGGCCAAAGCTTTCAGGGAGAGAGCCTTTCGAAGGGGTTACCAGAGGAGAAATTCTATCCATTGATCAGCGGAGGTCAGGCCGCCGCTGCCGGAGCATATAGCGGCGACGCCATGCTGTGCAAGCCCGGAACTCTAGATCCGGCAAAGGTGAAGGGAAAGATATTGGCGTGCTTAAGAGGAGAAACCGCAAGAATCGACAAAGGAATTCAAGGCGAGAATGCCGGCGCTGTGGGAATGATCCTTTGCAATGATGAGGGCGACGGCGAGCAAATCTCAGCTGACTTCCACGTGCTTCCCGCCATCCAGATTGGCTACGAAGCTGGTCTCGCCGTCTTTAACTACATCGACAACACCCAGAATCCAAGCGCGTATATTGTTCCACCTACAGAGAAGTTCGACGTGACGCCAGCTCCTATCATGGCTAAATTCTCATCCAGAGGACCCAACCTAATCACACCCGAGATTATTAAGCCTGATATCACTGCACCTGGCGTGAACATTATAGCAGCGACTACACAAGCACACAGCCCTTCCGACGATCCTTCCGACAACCGGAAGACTCCTTACGTTAGCATGTCTGGAACATCCATGTCTTGCCCACACATCTCCGGCGTAGTCGGCCTCCTCAAGACTCTCCACCCCGACTGGAGCCCCGCCGCCATCAAATCCGCCATCATGACCTCTGGTTCTTAA 1788 53.58 MAVGRQRSAAAGCQRSMVTIDGRSTSYVVLLGSHSHGLEVSEADLQRVTNSHYKLLGSFLGSNKKAKDAIFYSYKKHINGFAAVLEEEEAAELAKHPEVAVVLANEMMELHTTHSWRFMHLERNGSVPSSAWRNTARFGEDSIIANLDSGVWPESMSFRDDGITKPIPSKWKGSCENPHNNGFHCNRKLIGAKFFNEGYIAYMRSINANFDTSSVINSTRDYAGHGSHTLSTAGGNFVAAKDVFGSSGFGSAKGGSPRARLAPYKVCWGDNVGCPTADILQGVDEAIHDGVDVISYSVGGGPSPFYQDGFAIASFHAVKNGISVVCSAGNSGPDPGSAVNLAPWMLTVGASTLDRRIEAVVQLNNGQSFQGESLSKGLPEEKFYPLISGGQAAAAGAYSGDAMLCKPGTLDPAKVKGKILACLRGETARIDKGIQGENAGAVGMILCNDEGDGEQISADFHVLPAIQIGYEAGLAVFNYIDNTQNPSAYIVPPTEKFDVTPAPIMAKFSSRGPNLITPEIIKPDITAPGVNIIAATTQAHSPSDDPSDNRKTPYVSMSGTSMSCPHISGVVGLLKTLHPDWSPAAIKSAIMTSGS 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30434562 30440104 - Maker00019758 Lcy5g1287 633102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1287 595 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 11 111 IPR037045 -
Lcy5g1287 595 Gene3D - 354 497 - -
Lcy5g1287 595 CDD PA_subtilisin_like 360 490 - -
Lcy5g1287 595 ProSitePatterns Serine proteases, subtilase family, serine active site. 559 569 IPR023828 -
Lcy5g1287 595 Gene3D Peptidase S8/S53 domain 142 594 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy5g1287 595 FunFam Subtilisin-like protease SBT5.3 16 111 - -
Lcy5g1287 595 Pfam PA domain 402 475 IPR003137 -
Lcy5g1287 595 CDD Peptidases_S8_3 109 593 IPR034197 -
Lcy5g1287 595 FunFam subtilisin-like protease SBT1.5 354 497 - -
Lcy5g1287 595 SUPERFAMILY Subtilisin-like 110 593 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy5g1287 595 Pfam Subtilase family 140 593 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy5g1287 595 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 52 593 IPR045051 -
Lcy5g1287 595 SUPERFAMILY PA domain 394 470 IPR046450 -
Lcy5g1287 595 Pfam Peptidase inhibitor I9 26 111 IPR010259 -
Lcy5g1287 595 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Lcy5g1287 595 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Lcy5g1287 595 PRINTS Subtilisin serine protease family (S8) signature 558 574 IPR015500 -
Lcy5g1287 595 ProSiteProfiles Serine proteases, subtilase domain profile. 115 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1287 Lcy-Chr5:30434562 Lcy5g1327 Lcy-Chr5:31636800 1.86E-260 dispersed
Lcy5g1287 Lcy-Chr5:30434562 Lcy9g0103 Lcy-Chr9:2228919 4.33E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1287 - - - 0.0