Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1341 ATGGCCTCGAAGACGAGTTCGAAACCTTCTGCAAAGCAAACGAAGGGGATAACCGGCGTTAAAGCAACCGATGCAAGTGATCTGAAGTCCTTACCTTCACAGACTTCGTTGGGAAACAAAATTGGTTCAGTTATCTCTGGAGATGTATCGAACTCGAGATCTTTGAATCAGTCTACTTTGATTGATTCATCAAATACCAAATCCTCAAGTTTAAATCCTAAAGAGTCCACTGAGTCTTGTAATCAGAAAGTCAAAGAAAATTCCTTGAAGCCTGGCTCTAAGACACTGACAGAAGGAGATCCTGCTCTTAGCGGCACTCGGGGCTCAGTGGAGGACTCTATAGATCAAGAGAAGAAAATATCAGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTCTTGCCAAGACCAGCGGAAGTGCTAAAATCAGCGACCGTGTCGAGATGGTTGAGAGTGGCAAGAGCAGTATGTGTCGAGGAAGCACAAGCAGCGACATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTTCAAGGGATGGGATATTGGGATTAGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGTGATATCGGAAGCGTCTACCTGTCGGAATTGAGTGGCACTAAATGTTATTTTGCAATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTGCTTCGCGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACCCATTTTGAGACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCCGGCGGAGACTTGCACACTCTAAGACAGAGACAGCCAGGGAAGCATTTTCCCGAACAGGCGGTGAAATTTTATGTAGCAGAGGTGCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTATACAGAGACCTTAAGCCTGAGAATGTTCTCGTGAGGGAAGATGGCCACATAATGCTTTCGGACTTTGATCTTTCCCTAAGATGTGCTGTTAGTCCAACGTTGGTGAAGGGCTCGTGTTCTGAGTCTGAACCCTTAAGAAAGAATCCAGTTTACTGTGTCCAGCCGGCTTGTATCGAACCTTCCTGTATCCAGCCATCCTGTGTAGTTCCCACGACATGCTTCTCTCCCCGAATTTTCTCTAGCAAGTCAAAGAAAGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACGCCATTACCAGAGCTCATCGCAGAGCCTACAGAGGCGAGGTCAATGTCATTTGTTGGTACACATGAGTACTTGGCACCAGAGATCATTAAAGGCGAAGGTCACGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACCCCTTTTAAGGGATCTGGAAATCGAGCCACACTGTTCAATGTCGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGAGATCTCATCAGAGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACACCCATTCTTTGAAGGTGTTAACTGGGCATTGATACGATGTGCTTCGCCACCGGAAGTTCCGAAGCCTGTTGAGATTGAGAGGATACCATCGCCTGCACCTCCAGTCAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCTGATTCCAAATCGTCTGATAATTATCTTGAGTTTGATTTCTTTTAG 1833 45.55 MASKTSSKPSAKQTKGITGVKATDASDLKSLPSQTSLGNKIGSVISGDVSNSRSLNQSTLIDSSNTKSSSLNPKESTESCNQKVKENSLKPGSKTLTEGDPALSGTRGSVEDSIDQEKKISECGSGKDSSVSAKVSDGTNSLAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRSRDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNPVYCVQPACIEPSCIQPSCVVPTTCFSPRIFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMARPGPDSKSSDNYLEFDFF 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31986784 31992446 + Maker00019874 Lcy5g1341 633156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1341 610 FunFam Serine/threonine-protein kinase AGC1-7 446 571 - -
Lcy5g1341 610 MobiDBLite consensus disorder prediction 27 102 - -
Lcy5g1341 610 ProSiteProfiles Protein kinase domain profile. 216 553 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1341 610 Pfam Protein kinase domain 217 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1341 610 Pfam Protein kinase domain 450 553 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1341 610 FunFam serine/threonine-protein kinase D6PK-like 300 367 - -
Lcy5g1341 610 Gene3D Transferase(Phosphotransferase) domain 1 300 368 - -
Lcy5g1341 610 SUPERFAMILY Protein kinase-like (PK-like) 191 581 IPR011009 -
Lcy5g1341 610 FunFam Serine/threonine-protein kinase D6PK-like 214 299 - -
Lcy5g1341 610 Gene3D Phosphorylase Kinase; domain 1 214 299 - -
Lcy5g1341 610 MobiDBLite consensus disorder prediction 577 602 - -
Lcy5g1341 610 SMART serkin_6 216 553 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1341 610 MobiDBLite consensus disorder prediction 1 20 - -
Lcy5g1341 610 MobiDBLite consensus disorder prediction 125 148 - -
Lcy5g1341 610 CDD STKc_phototropin_like 215 576 - -
Lcy5g1341 610 MobiDBLite consensus disorder prediction 1 173 - -
Lcy5g1341 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1341 610 Gene3D Transferase(Phosphotransferase) domain 1 447 571 - -
Lcy5g1341 610 PANTHER FLIPPASE KINASE 1-RELATED 82 573 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2134 Lcy-Chr1:29645105 Lcy5g1341 Lcy-Chr5:31986784 6.33E-184 dispersed
Lcy5g1341 Lcy-Chr5:31986784 Lcy8g1981 Lcy-Chr8:46074575 1.30E-179 dispersed
Lcy10g0165 Lcy-Chr10:2253453 Lcy5g1341 Lcy-Chr5:31986784 2.85E-241 transposed
Lcy11g2128 Lcy-Chr11:44806097 Lcy5g1341 Lcy-Chr5:31986784 1.90E-228 transposed
Lcy4g2125 Lcy-Chr4:47796637 Lcy5g1341 Lcy-Chr5:31986784 1.29E-133 transposed
Lcy5g1683 Lcy-Chr5:39130588 Lcy5g1341 Lcy-Chr5:31986784 5.35E-121 transposed
Lcy6g0693 Lcy-Chr6:6734005 Lcy5g1341 Lcy-Chr5:31986784 1.45E-103 transposed
Lcy1g0511 Lcy-Chr1:4446560 Lcy5g1341 Lcy-Chr5:31986784 1.21E-281 wgd
Lcy12g1309 Lcy-Chr12:28672732 Lcy5g1341 Lcy-Chr5:31986784 4.80E-36 wgd
Lcy5g0826 Lcy-Chr5:13086591 Lcy5g1341 Lcy-Chr5:31986784 3.45E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65934 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1341 K08286 - csv:101213662 1102.81