Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1356 ATGGCTTCTCTTGTGCATCTTTTTTCCATTCTCTTTCGATGTCTCCCCCTCCTCCAGGAGCCTCCATTTTCTCTGGATATGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCTTTGGAAGTTTTACATGGTCGGGTGAATACTCAGGATCGGATCCCAAGGTTCTCTTCCTTTGTGCTGCGGCCGCAGTGCTTGAGATAGAATTTTTAGAGGGGTGGAGAAATCCACGAATGAGCTTTGGGAGACGATTAGATTTAACTCGTCTTTGTGGGTGTCAGTTTCTAAGCTTTTTTGTGATTTTCAGCTCGATCTTATTATTTTGGACTGGGACCCGTTCCTGTAGTCTAGGCGGGTGTTCTTGGCGGGCTTTTTTTTTGGTTGTGGGGTTAAAGGCATGTCCAGAAACCCGTAGAAAGAAATTATCTATGAGCTCCCGACTTTTTCTAGTCTGGTTAGATGTGAGGTGGGAGATGGGAGGGAGACTTTTTCTAGTCTGCTCTAGATTTCCTACTTTCTATCGATTGTCCTCCATGAAATATCGTACGATTTTCAAGGTTATTAATGTCTTCAAGGGCTCTCCTTTTTATTCTTTGGGTTACCTTCGTTCTTTGATCGATAGGGAAGCGAGAGAGGTTGCAGCTGTCATGTCCTTGATAGGACGAAGGAAGATCTGGAACACCTCCTGTGGGGTTGTGCCTTTGTACGTTCAGTTTGGAGTTTGTTTTTTGAGGCCTTCGAGTTGCAGGTCTGATGCTTTAGAGACCATAGGGAGATGGTTGAGGAGTTCCTCCTCCATCTGCCATTCAGAGGAAGGGGTGTTATGGCTTGCAGGGGTGTGTGCAGTTCTATGGGAGGAAGACTTGGATCATATTCTTTGGAGCTGTGGGTTTGCCTGCTCTGTTTGGGGCCTTTTCTTTGATTCATTTGGGCGGAAAATGATAAGCTATCCGGATTTGTGGGTGATGATTGAAGAGTTCCTCCTCCATTCGGTGTTCCGTGACAAAGGAAGATTTTTGTGGCAAGCCGGCATTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGGTATGTTTCTCATTCACTCGATCTTTTCACCATCTGGCTTACTTGGGTAGTTTATATTTGTTTGTAAGCATTGTAGTTAACCCTGCCATTATAAGAGAATACCAAAGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATGTTCTCTGTTTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACTTTATGGTATAGACCTCCAGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCGGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAATTGGCCAGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAATTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGCCCATCAATTCGGGCATTCACTGCATCTATCTCGCCCAACTTTTCAGAGATCTCATCAAGTCGACTTTCGACGTATCGTACCGAGTCAGGCACAGCTCGCCCTGGACAAGCATGCTCAAGACACTGTGCAGCAGCACAAAGCTAGCTGCCGTTGCTATCCTGCCCTTCTCATTGGATTGGATATACATGTCATTGCCCATCCTCCAGAGGATATCTGCCAAGGATGCCTTAGATGCGGAGTATTTTTGGACAGATCCATTGCCTTGTGACCCGAAGAGTTTACCCAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAACAACGACAACATGAAGAAACTGCAAAGCGGCAGAAGTTGCAACACCAACAACATGCACGCCTTCCACCTATTCAGCAGTCGGGACAAGCTCATGCACAGATGCGGCCGCTACCTAACCAACCTATTCATGGGTCTCAACCGCCAGTTGCTGCAGGGCCTAACCATCATTTTGGGGGGAAGCCTCGTGGGCCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTGCTTCTGGATACAACCACCCAAGCCGTGGTGGTCAAGGTGGGGGTGGTTATGGCAACACACAATATGCACAGGGACGAGGTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCCCGGGGTGGAGCTGGAGGTGGTGGTGGTGGTTATGGCGTCGGAGCTCCAAATTACCCTCAGAATGGTCCATATGCCGGTAGTTCTGGCACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA 2607 46.61 MASLVHLFSILFRCLPLLQEPPFSLDMEGQNSQESEVLCFGSFTWSGEYSGSDPKVLFLCAAAAVLEIEFLEGWRNPRMSFGRRLDLTRLCGCQFLSFFVIFSSILLFWTGTRSCSLGGCSWRAFFLVVGLKACPETRRKKLSMSSRLFLVWLDVRWEMGGRLFLVCSRFPTFYRLSSMKYRTIFKVINVFKGSPFYSLGYLRSLIDREAREVAAVMSLIGRRKIWNTSCGVVPLYVQFGVCFLRPSSCRSDALETIGRWLRSSSSICHSEEGVLWLAGVCAVLWEEDLDHILWSCGFACSVWGLFFDSFGRKMISYPDLWVMIEEFLLHSVFRDKGRFLWQAGIQVYMARELKTGEIVALKKIRMDNEREGVCFSFTRSFHHLAYLGSLYLFVSIVVNPAIIREYQSPEKDEQGKPGMFSVCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQPINSGIHCIYLAQLFRDLIKSTFDVSYRVRHSSPWTSMLKTLCSSTKLAAVAILPFSLDWIYMSLPILQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHQQHARLPPIQQSGQAHAQMRPLPNQPIHGSQPPVAAGPNHHFGGKPRGPPGPGRYPSGGNPASGYNHPSRGGQGGGGYGNTQYAQGRGAPYGSGNMSGAGPRGGAGGGGGGYGVGAPNYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32393205 32409174 + Maker00019798 Lcy5g1356 633171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1356 868 MobiDBLite consensus disorder prediction 721 737 - -
Lcy5g1356 868 FunFam Cyclin-dependent kinase C-2 416 601 - -
Lcy5g1356 868 ProSiteProfiles Protein kinase domain profile. 333 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1356 868 Gene3D Phosphorylase Kinase; domain 1 344 417 - -
Lcy5g1356 868 SMART serkin_6 341 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1356 868 PANTHER CELL DIVISION PROTEIN KINASE 346 594 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lcy5g1356 868 MobiDBLite consensus disorder prediction 840 868 - -
Lcy5g1356 868 MobiDBLite consensus disorder prediction 686 868 - -
Lcy5g1356 868 Pfam Protein kinase domain 346 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1356 868 Coils Coil 699 719 - -
Lcy5g1356 868 MobiDBLite consensus disorder prediction 687 716 - -
Lcy5g1356 868 SUPERFAMILY Protein kinase-like (PK-like) 346 593 IPR011009 -
Lcy5g1356 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1356 868 Gene3D Transferase(Phosphotransferase) domain 1 418 609 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1356 Lcy-Chr5:32393205 Lcy8g2188 Lcy-Chr8:47937030 7.02E-81 dispersed
Lcy10g2384 Lcy-Chr10:47416228 Lcy5g1356 Lcy-Chr5:32393205 1.66E-06 transposed
Lcy8g2186 Lcy-Chr8:47926687 Lcy5g1356 Lcy-Chr5:32393205 2.51E-143 transposed
Lcy10g0519 Lcy-Chr10:13333604 Lcy5g1356 Lcy-Chr5:32393205 1.29E-11 wgd
Lcy11g0220 Lcy-Chr11:2806655 Lcy5g1356 Lcy-Chr5:32393205 4.53E-29 wgd
Lcy12g1213 Lcy-Chr12:24638396 Lcy5g1356 Lcy-Chr5:32393205 7.11E-13 wgd
Lcy13g0741 Lcy-Chr13:11249957 Lcy5g1356 Lcy-Chr5:32393205 1.26E-34 wgd
Lcy5g1356 Lcy-Chr5:32393205 Lcy7g1603 Lcy-Chr7:31271690 2.91E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65935 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1356 K08819 - gmx:100793565 547.354