Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1356 | ATGGCTTCTCTTGTGCATCTTTTTTCCATTCTCTTTCGATGTCTCCCCCTCCTCCAGGAGCCTCCATTTTCTCTGGATATGGAAGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCTTTGGAAGTTTTACATGGTCGGGTGAATACTCAGGATCGGATCCCAAGGTTCTCTTCCTTTGTGCTGCGGCCGCAGTGCTTGAGATAGAATTTTTAGAGGGGTGGAGAAATCCACGAATGAGCTTTGGGAGACGATTAGATTTAACTCGTCTTTGTGGGTGTCAGTTTCTAAGCTTTTTTGTGATTTTCAGCTCGATCTTATTATTTTGGACTGGGACCCGTTCCTGTAGTCTAGGCGGGTGTTCTTGGCGGGCTTTTTTTTTGGTTGTGGGGTTAAAGGCATGTCCAGAAACCCGTAGAAAGAAATTATCTATGAGCTCCCGACTTTTTCTAGTCTGGTTAGATGTGAGGTGGGAGATGGGAGGGAGACTTTTTCTAGTCTGCTCTAGATTTCCTACTTTCTATCGATTGTCCTCCATGAAATATCGTACGATTTTCAAGGTTATTAATGTCTTCAAGGGCTCTCCTTTTTATTCTTTGGGTTACCTTCGTTCTTTGATCGATAGGGAAGCGAGAGAGGTTGCAGCTGTCATGTCCTTGATAGGACGAAGGAAGATCTGGAACACCTCCTGTGGGGTTGTGCCTTTGTACGTTCAGTTTGGAGTTTGTTTTTTGAGGCCTTCGAGTTGCAGGTCTGATGCTTTAGAGACCATAGGGAGATGGTTGAGGAGTTCCTCCTCCATCTGCCATTCAGAGGAAGGGGTGTTATGGCTTGCAGGGGTGTGTGCAGTTCTATGGGAGGAAGACTTGGATCATATTCTTTGGAGCTGTGGGTTTGCCTGCTCTGTTTGGGGCCTTTTCTTTGATTCATTTGGGCGGAAAATGATAAGCTATCCGGATTTGTGGGTGATGATTGAAGAGTTCCTCCTCCATTCGGTGTTCCGTGACAAAGGAAGATTTTTGTGGCAAGCCGGCATTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCATTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGGTATGTTTCTCATTCACTCGATCTTTTCACCATCTGGCTTACTTGGGTAGTTTATATTTGTTTGTAAGCATTGTAGTTAACCCTGCCATTATAAGAGAATACCAAAGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATGTTCTCTGTTTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCATAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATTACTTTATGGTATAGACCTCCAGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCGGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAATTGGCCAGGGGTTTCTAAAATCCCTTGGTACAACAATTTCAAGCCCACAAGGCCAATGAAGAGACGTATTAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAATTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGCCCATCAATTCGGGCATTCACTGCATCTATCTCGCCCAACTTTTCAGAGATCTCATCAAGTCGACTTTCGACGTATCGTACCGAGTCAGGCACAGCTCGCCCTGGACAAGCATGCTCAAGACACTGTGCAGCAGCACAAAGCTAGCTGCCGTTGCTATCCTGCCCTTCTCATTGGATTGGATATACATGTCATTGCCCATCCTCCAGAGGATATCTGCCAAGGATGCCTTAGATGCGGAGTATTTTTGGACAGATCCATTGCCTTGTGACCCGAAGAGTTTACCCAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAACAACGACAACATGAAGAAACTGCAAAGCGGCAGAAGTTGCAACACCAACAACATGCACGCCTTCCACCTATTCAGCAGTCGGGACAAGCTCATGCACAGATGCGGCCGCTACCTAACCAACCTATTCATGGGTCTCAACCGCCAGTTGCTGCAGGGCCTAACCATCATTTTGGGGGGAAGCCTCGTGGGCCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTGCTTCTGGATACAACCACCCAAGCCGTGGTGGTCAAGGTGGGGGTGGTTATGGCAACACACAATATGCACAGGGACGAGGTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCCCGGGGTGGAGCTGGAGGTGGTGGTGGTGGTTATGGCGTCGGAGCTCCAAATTACCCTCAGAATGGTCCATATGCCGGTAGTTCTGGCACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA | 2607 | 46.61 | MASLVHLFSILFRCLPLLQEPPFSLDMEGQNSQESEVLCFGSFTWSGEYSGSDPKVLFLCAAAAVLEIEFLEGWRNPRMSFGRRLDLTRLCGCQFLSFFVIFSSILLFWTGTRSCSLGGCSWRAFFLVVGLKACPETRRKKLSMSSRLFLVWLDVRWEMGGRLFLVCSRFPTFYRLSSMKYRTIFKVINVFKGSPFYSLGYLRSLIDREAREVAAVMSLIGRRKIWNTSCGVVPLYVQFGVCFLRPSSCRSDALETIGRWLRSSSSICHSEEGVLWLAGVCAVLWEEDLDHILWSCGFACSVWGLFFDSFGRKMISYPDLWVMIEEFLLHSVFRDKGRFLWQAGIQVYMARELKTGEIVALKKIRMDNEREGVCFSFTRSFHHLAYLGSLYLFVSIVVNPAIIREYQSPEKDEQGKPGMFSVCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLTLDPSQPINSGIHCIYLAQLFRDLIKSTFDVSYRVRHSSPWTSMLKTLCSSTKLAAVAILPFSLDWIYMSLPILQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHQQHARLPPIQQSGQAHAQMRPLPNQPIHGSQPPVAAGPNHHFGGKPRGPPGPGRYPSGGNPASGYNHPSRGGQGGGGYGNTQYAQGRGAPYGSGNMSGAGPRGGAGGGGGGYGVGAPNYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ | 868 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32393205 | 32409174 | + | Maker00019798 | Lcy5g1356 | 633171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1356 | 868 | MobiDBLite | consensus disorder prediction | 721 | 737 | - | - | |
Lcy5g1356 | 868 | FunFam | Cyclin-dependent kinase C-2 | 416 | 601 | - | - | |
Lcy5g1356 | 868 | ProSiteProfiles | Protein kinase domain profile. | 333 | 608 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1356 | 868 | Gene3D | Phosphorylase Kinase; domain 1 | 344 | 417 | - | - | |
Lcy5g1356 | 868 | SMART | serkin_6 | 341 | 607 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1356 | 868 | PANTHER | CELL DIVISION PROTEIN KINASE | 346 | 594 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lcy5g1356 | 868 | MobiDBLite | consensus disorder prediction | 840 | 868 | - | - | |
Lcy5g1356 | 868 | MobiDBLite | consensus disorder prediction | 686 | 868 | - | - | |
Lcy5g1356 | 868 | Pfam | Protein kinase domain | 346 | 592 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1356 | 868 | Coils | Coil | 699 | 719 | - | - | |
Lcy5g1356 | 868 | MobiDBLite | consensus disorder prediction | 687 | 716 | - | - | |
Lcy5g1356 | 868 | SUPERFAMILY | Protein kinase-like (PK-like) | 346 | 593 | IPR011009 | - | |
Lcy5g1356 | 868 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 440 | 452 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g1356 | 868 | Gene3D | Transferase(Phosphotransferase) domain 1 | 418 | 609 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g1356 | Lcy-Chr5:32393205 | Lcy8g2188 | Lcy-Chr8:47937030 | 7.02E-81 | dispersed | |
Lcy10g2384 | Lcy-Chr10:47416228 | Lcy5g1356 | Lcy-Chr5:32393205 | 1.66E-06 | transposed | |
Lcy8g2186 | Lcy-Chr8:47926687 | Lcy5g1356 | Lcy-Chr5:32393205 | 2.51E-143 | transposed | |
Lcy10g0519 | Lcy-Chr10:13333604 | Lcy5g1356 | Lcy-Chr5:32393205 | 1.29E-11 | wgd | |
Lcy11g0220 | Lcy-Chr11:2806655 | Lcy5g1356 | Lcy-Chr5:32393205 | 4.53E-29 | wgd | |
Lcy12g1213 | Lcy-Chr12:24638396 | Lcy5g1356 | Lcy-Chr5:32393205 | 7.11E-13 | wgd | |
Lcy13g0741 | Lcy-Chr13:11249957 | Lcy5g1356 | Lcy-Chr5:32393205 | 1.26E-34 | wgd | |
Lcy5g1356 | Lcy-Chr5:32393205 | Lcy7g1603 | Lcy-Chr7:31271690 | 2.91E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65935 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g1356 | K08819 | - | gmx:100793565 | 547.354 |