Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1368 ATGGTCAAATTTGGTCCTGACCTTCACGTGCCACCAACGGTAAATTTGTTTGAGAGGGAGGAAGACGTGACATGCAAGACAGTAAGCCTCCAATGCTTAAGTCAGAAAATGGAAGAGGAGAGCAAGAGAGTGTTTCGGGACAAACCAGGTGGAACCGGGGTGCCCAGAGGCGGTAGGGACCATACGGAGCCAGACGGGCTCGACCCGTGCAGGTGGGTCGAGGGTCAGCCTCGGCCCCGAGGCAGACCATGGGCCTCGGCCTTGGGCCGAGCAGGGGTCGGGCTCGGTCTTGGCCTGACCGACTGGCCCGTTTCGCCCCCGGGGTCCATCCTCCAGTCCGATTTCTCTCTCTGCTTTGATCCTTCCAGTTCTCGCCGAAGTGATCGTTCATGCAGCGGATTGGTTTCGTGTAAGTTTCTGATGCCATGTGCAATTTGTTCTGTTCTAAATAAAAAGATCTTCATTGATTTTCTAATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCATAAGCTGTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTACCCGTCATGGTAGTTTTTCACGTTCAGTAGAAAATAATAATCAACCACAAAATGTTGATGAAGTGCCTCATCAATCTATGATTGTTACACAAGTTAGTTTTAGGCAAGTATTTGTTCTGCTGGCTACGTATTTGGGAGGAGGCACACTTTGTTTCTTCCTTGTTCGGGATCAGATCAGTGGAAAGAAAACAAACGGGATTGTTGATGCCCTTTACTTTTGTGTTGTGACAATGACCACGGTTGGATATGGAGATCTTGTACCTAGTAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAACTCCTTCTGGTAAAAGCCATGTTCATGAGCAAAAAGATCAGCTCTAGTGAGATCCTTCAGGAATCGGAGGCTCACAAACGCAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGTTCTCATCGTTGTTGGAACTCTTTTCTTGATTGTGGTTGAGAAGCTAGACATCACTGATGCATTTTATTGCGTTTGTTCCACAATCACAACTCTTGGCTATGGGGATGAGAGCTTCTCTACAACGGCCGGTCGTGTTTTTGCTGCCATTTGGATAATGAGCAGCACTATATGCTTGGCACAGTTCTTTCTGTACCTCGCAGAATTACACACAGAAAGGAGGCAGAAATCACTCGTGAATTGGGTTCTCTCCCGAAACCTCACATACTCAGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGAATATCTAATTCTGTTTTGATTCAAAATGCATGTACCATGGGCTTCTTGGCAATCTGCTTCATCAGTGTTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGACATTGCACCCATACTCGACACCTTTAAGAAGCTTGATATTGATCAATCAGGATGTCTAACAGAAGCTGATTTAATAACTCCATGGTCGTCGGCTTAA 1578 45.12 MVKFGPDLHVPPTVNLFEREEDVTCKTVSLQCLSQKMEEESKRVFRDKPGGTGVPRGGRDHTEPDGLDPCRWVEGQPRPRGRPWASALGRAGVGLGLGLTDWPVSPPGSILQSDFSLCFDPSSSRRSDRSCSGLVSCKFLMPCAICSVLNKKIFIDFLMDSGDVEQSLLHKLSDSDKRKSLQRRKSTRHGSFSRSVENNNQPQNVDEVPHQSMIVTQVSFRQVFVLLATYLGGGTLCFFLVRDQISGKKTNGIVDALYFCVVTMTTVGYGDLVPSSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQELLLVKAMFMSKKISSSEILQESEAHKRKYKFIMTGILLWVLIVVGTLFLIVVEKLDITDAFYCVCSTITTLGYGDESFSTTAGRVFAAIWIMSSTICLAQFFLYLAELHTERRQKSLVNWVLSRNLTYSDLEEADLDHDKVVRISNSVLIQNACTMGFLAICFISVAEFVIYKLKEMGKINQEDIAPILDTFKKLDIDQSGCLTEADLITPWSSA 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32561668 32566825 + Maker00019914 Lcy5g1368 633183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1368 525 FunFam Calcium-activated outward-rectifying potassium channel 1 217 312 - -
Lcy5g1368 525 SUPERFAMILY Voltage-gated potassium channels 219 313 - -
Lcy5g1368 525 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 222 449 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Lcy5g1368 525 Gene3D - 318 430 - -
Lcy5g1368 525 Pfam Ion channel 226 306 IPR013099 -
Lcy5g1368 525 Pfam Ion channel 347 418 IPR013099 -
Lcy5g1368 525 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Lcy5g1368 525 PRINTS Two pore domain K+ channel signature 262 290 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy5g1368 525 PRINTS Two pore domain K+ channel signature 379 388 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy5g1368 525 SUPERFAMILY Voltage-gated potassium channels 336 435 - -
Lcy5g1368 525 Gene3D - 215 311 - -
Lcy5g1368 525 MobiDBLite consensus disorder prediction 41 68 - -
Lcy5g1368 525 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1368 Lcy-Chr5:32561668 Lcy6g2069 Lcy-Chr6:43823928 2.32E-14 dispersed
Lcy1g0208 Lcy-Chr1:1903952 Lcy5g1368 Lcy-Chr5:32561668 1.87E-42 transposed
Lcy9g1112 Lcy-Chr9:35050265 Lcy5g1368 Lcy-Chr5:32561668 7.19E-112 transposed
Lcy11g0982 Lcy-Chr11:29767604 Lcy5g1368 Lcy-Chr5:32561668 3.48E-24 wgd
Lcy4g1473 Lcy-Chr4:36878744 Lcy5g1368 Lcy-Chr5:32561668 9.24E-12 wgd
Lcy5g1179 Lcy-Chr5:26404189 Lcy5g1368 Lcy-Chr5:32561668 1.72E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1368 K05389 - csv:101214791 571.237