Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1378 ATGGTCCTCCAAGTTGCGGTCGAGGCTCATCGGGGGCTGTTCTTGGAAGGGAGCCCTGAAGGGAAGGTGCCGGTTGTGAAATTTGATGATAAATGGATTCCTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTATCCAGTCGAGCCTTCGCTTGTTACTCCTCCTGAATGTCCTCTGTCTACTCTGGCTGATAGGGGATCAAAGATATTTGGTGCTTTTGTAACATTTTTGAAGTGCAAGGACCTGATTGATGTTTCAGAGAAGGATTTTCTTGAAGAGTTGAAGACACTCAATGAGCATCTTAAGGCTCATGTATTCACTGGACAGAAGGTAACTGCTGTTAATTTAAGTCCAGCACCAAAGTTGTACCATGTTGATGTTGTTCTCTGCCATCTTAAGAAGTGGGCTATCCCTAAAGACTTAGCCAGTTTAATCACCTACAAA 450 44.0 MVLQVAVEAHRGLFLEGSPEGKVPVVKFDDKWIPDSDVIVGILEEKYPVEPSLVTPPECPLSTLADRGSKIFGAFVTFLKCKDLIDVSEKDFLEELKTLNEHLKAHVFTGQKVTAVNLSPAPKLYHVDVVLCHLKKWAIPKDLASLITYK 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32972912 32975073 - Maker00019759 Lcy5g1378 633193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1378 150 Gene3D Glutaredoxin 2 51 - -
Lcy5g1378 150 SUPERFAMILY Thioredoxin-like 8 51 IPR036249 -
Lcy5g1378 150 Gene3D - 55 150 - -
Lcy5g1378 150 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 51 IPR004045 -
Lcy5g1378 150 SUPERFAMILY GST C-terminal domain-like 70 149 IPR036282 -
Lcy5g1378 150 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 8 149 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro)
Lcy5g1378 150 Pfam Glutathione S-transferase, N-terminal domain 7 48 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1111 Lcy-Chr12:21109465 Lcy5g1378 Lcy-Chr5:32972912 2.21E-85 dispersed
Lcy5g1378 Lcy-Chr5:32972912 Lcy7g0839 Lcy-Chr7:8278948 8.95E-67 dispersed
Lcy3g0612 Lcy-Chr3:23078808 Lcy5g1378 Lcy-Chr5:32972912 1.63E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1378 K21888 - csv:101203666 176.792