Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1421 ATGACGAGGAAGAAGGTAAAATTGGCATTCATCACAAACGACGCCGCAAGAAAAGCCACATTCAAGAAAAGAAACAAAGGCTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATGCCCACCCCGACCTCTGGCCCTCCGCCGTCGGCGTCCAGAGGGTTCTCTCTCAGTTCAGAAGCCTGCCGGAGATAGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATTGCCAAGGCCGCCGATCAGCTCAAGAAGCTCGAAAGGGAGAATCGCGAGAAGGAGATCACCGATGTCATGTTTCGGAGCCTCGTTGCGGGGTCGGCGCCGCTGCGGGGTCTCAATGTGATTGATTTGAATGATCTTGGTTGGATGGTTGATCAGAAGGTGGCTGATATTTGCAAGAGGATGGAGTTGCTTTCTGCAGCCATGGTGGCGAAGGCAAACGACCAACCACCGTGTGTGGAGGCGGTCGAGCCGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGGAAGTGATGATCAAATGGGATTCAATATTGGGGATGATATGATTCAGTTTCCTAATTTTGGGGAGGATGAGAACCATGGCGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 675 52.0 MTRKKVKLAFITNDAARKATFKKRNKGFLKKLTELTTLCGIDACAIIFSPFNAHPDLWPSAVGVQRVLSQFRSLPEIEQCKKMVNQETFLRHRIAKAADQLKKLERENREKEITDVMFRSLVAGSAPLRGLNVIDLNDLGWMVDQKVADICKRMELLSAAMVAKANDQPPCVEAVEPPSWFMEMVSQGSDDQMGFNIGDDMIQFPNFGEDENHGAFWSNNAFFP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34129940 34130614 - Maker00019562 Lcy5g1421 633236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1421 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Lcy5g1421 224 Coils Coil 87 114 - -
Lcy5g1421 224 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lcy5g1421 224 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 153 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy5g1421 224 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1421 224 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1421 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g2387 Lcy-Chr2:50403958 Lcy5g1421 Lcy-Chr5:34129940 4.51E-83 dispersed
Lcy5g0501 Lcy-Chr5:5460792 Lcy5g1421 Lcy-Chr5:34129940 5.49E-35 dispersed
Lcy5g0510 Lcy-Chr5:5628175 Lcy5g1421 Lcy-Chr5:34129940 3.86E-36 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
Lcy7g0293 . 1 340 Type I MADS-box Gene Family AT2G03060 50.8 4.9e-95 345.5
Lcy6g0427 . 1 179 Type I MADS-box Gene Family AT5G60440 59.3 5.8e-51 198.7
Lcy2g2387 . 1 166 Type I MADS-box Gene Family AT5G48670 64.5 3.2e-55 213.0
Lcy5g1421 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.5e-47 186.8
Lcy6g0427 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.8e-38 156.0
Lcy6g0987 . 181 410 Type I MADS-box Gene Family AT1G77950 50.6 1.8e-53 206.8
Lcy6g0987 . 181 464 Type I MADS-box Gene Family AT1G22130 50.7 2.7e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20112 None None None None Lcy TF