Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g1421 | ATGACGAGGAAGAAGGTAAAATTGGCATTCATCACAAACGACGCCGCAAGAAAAGCCACATTCAAGAAAAGAAACAAAGGCTTTTTGAAGAAGCTCACCGAACTCACCACTCTCTGCGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATGCCCACCCCGACCTCTGGCCCTCCGCCGTCGGCGTCCAGAGGGTTCTCTCTCAGTTCAGAAGCCTGCCGGAGATAGAACAGTGCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATTGCCAAGGCCGCCGATCAGCTCAAGAAGCTCGAAAGGGAGAATCGCGAGAAGGAGATCACCGATGTCATGTTTCGGAGCCTCGTTGCGGGGTCGGCGCCGCTGCGGGGTCTCAATGTGATTGATTTGAATGATCTTGGTTGGATGGTTGATCAGAAGGTGGCTGATATTTGCAAGAGGATGGAGTTGCTTTCTGCAGCCATGGTGGCGAAGGCAAACGACCAACCACCGTGTGTGGAGGCGGTCGAGCCGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGGAAGTGATGATCAAATGGGATTCAATATTGGGGATGATATGATTCAGTTTCCTAATTTTGGGGAGGATGAGAACCATGGCGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA | 675 | 52.0 | MTRKKVKLAFITNDAARKATFKKRNKGFLKKLTELTTLCGIDACAIIFSPFNAHPDLWPSAVGVQRVLSQFRSLPEIEQCKKMVNQETFLRHRIAKAADQLKKLERENREKEITDVMFRSLVAGSAPLRGLNVIDLNDLGWMVDQKVADICKRMELLSAAMVAKANDQPPCVEAVEPPSWFMEMVSQGSDDQMGFNIGDDMIQFPNFGEDENHGAFWSNNAFFP | 224 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 34129940 | 34130614 | - | Maker00019562 | Lcy5g1421 | 633236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g1421 | 224 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
| Lcy5g1421 | 224 | Coils | Coil | 87 | 114 | - | - | |
| Lcy5g1421 | 224 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
| Lcy5g1421 | 224 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 153 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lcy5g1421 | 224 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lcy5g1421 | 224 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g2387 | Lcy-Chr2:50403958 | Lcy5g1421 | Lcy-Chr5:34129940 | 4.51E-83 | dispersed | |
| Lcy5g0501 | Lcy-Chr5:5460792 | Lcy5g1421 | Lcy-Chr5:34129940 | 5.49E-35 | dispersed | |
| Lcy5g0510 | Lcy-Chr5:5628175 | Lcy5g1421 | Lcy-Chr5:34129940 | 3.86E-36 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20112 | None | None | None | None | Lcy | TF |
Pathway information