Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1477 ATGGAAGCTTCGCACGAGCATCTTCTTGAAAAGAGTTTAAAGAGGTACATAAAGCTCCATAGCTTCAAGCACATAATGAATGGGTTTGCAGTGCAGACAAGTGCATCAGAGGCCAGAAAGCTGAGAGAAGCTGAAGGGGTGAAATTGGTAGAGAGAGACAGAGGAGTGAGAAAGATGACAACTTACACCCCTGAGTTTCTAGGGATGATGCCCTACAAATCAAGGGTATGGAAGAAGAAGACAGACAAATTATTAGATGGTGGGGAAGGGATTGTGATTGGGATTGTGGACTCTGGGATTGACCCAACACACCCAAGCTTTGGTGGTTTTGATGATGATTTTAATGGTAATGTTTCAAAAGATGATGAGTTGCTGTTTTGTGGGGTTTGTGAAAAGGGTCCTTTTTTTCCTTCAACTTCTTGCAATGGGAAGATAGTGAGTGGTAGGTTTTTCTCAGCTGGGGCTCAGGCTGTTGCAAAGCTTGATTCTTCTGTTGACTTTCTCTCCCCTTTTGATGCTGAAGGCCATGGAAGCCATGTAGCATCCATAGCTGCTGGGAATGCAGGAGTTCCAGTTATTGTGAACGGTTTCTTCTATGGATTAGCTAGTGGGATGGCACCACGTGCAAGAATTGCTGTTTACAAGGCAGTGTATCCAACAGTGGCTACTCTAACAGATGTAGTTTCAGCAATAGATCAAGCAGTTGCTGATAGAGTTGATATATTGGCATTATCAGTTGGACCAAATGAACCACCAGAAGCAGGATTTACCTTCCTAAGCATATATGACATTGCCATTCTATCTGCCACACGAGCTGGAATCCTTGTGGTTCAGGCAGCCGGAAATAACGGCCCGACCCGAGCAACCGTCGTCTCGTACAGCCCTTGGGCGGTTGGTGTGGCAGCTTCCGGCACCGACAGAGTTTATCCGGCCTCACTTATCCTTGGCAATGGCCAAAAAGTTGGTGGGCTAGGACTGTCTGGACCCACTTTGGGGAGTGAGTTTTTCCTACACAAGCTGGTATTAGCCAAGGATGCAATGAAAGATCCCAACATACCAAATTACAGTGAAGAGTGCCAATATCCTGAAGCTTTTGACCCAAATGTTGTCCAAAACAGCATAGTCATCTGCTCTTTCTCTCAAGGATTTCTCAATGGAACCTCCTCTCTCACAGCCATCATTCACACTGCAACAACACTCAGATTCATGGGTTTTGTTCTCATTGCAAATCCCAACTATGGCGATTTCATAGCAGAGCCAATCCCTTTCAGAGTTCCAGGCATTCTCATCCCAAACGTATCAGATTCTAAGGTGATACTGAAGTACTATGAAGAAAATACATGCAAGGATAGAAGAGGAATAGTTACCAAATTTAAAGGCAAAGCAGGCATAGGAGAAGGAAGAGTTGCTTCATTTGGAGGCCAAGCACCAACAGTTAGCAGATTCTCATCAAGAGGACCAGACTACATGAACAGTAATAGGACTGCAGCTGATGTGCTAAAGCCAGATATTCTTGCCCCAGGTCACCAAATTTGGGCTGCTTGGAGCCCCCTCAGTGCCTCAGAGCCACTTTTAAAGGGATACCAATTTGCACTGTTGTCTGGAACAAGTATGGCAGCACCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAGAATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATCCAGGCAGAGGGATTCAACCTTCATAGTTTATATCCTTCTACTCCCTTTGATTTGGGTGCTGGCCTCGTCTCACCGACCAATGCTTTGGACCCGGGACTGGTCTTCCCAGCAGAACATGAAGACTATATAAACTTCTTGTGCTCATTACCTGGGGCTGATCCTGCTGTCATCAAAAGCATCACAGGAGGACAGTGCAATGGCTCTCTTCCACAGCAACACCCTGCAGATCTGAACCTTCCTTCAGTCACAATATCATCACTGGTTGGGCATCAGGTGGTGCAGAGAAGAGTGAAGAATGTAGGAGGCAAAGTGGAGACATATGTGTGGTCAGTGATCCCACCAAATGGGACAACAGTCAACATCAATCCACCATGGTTCACCATAGCACCAGAAGGAGTCCAAAACTTGGAAATACAGATCAATGTCACACACAAAATGAATCACTTTACCTTTGGGGAGATTGTTTTGACAGGAAGTTTAAACCATATTGCAAGGATCCCTTTGTCAGTTCTGGCTGTTTCTTTATCCTAA 2271 45.13 MEASHEHLLEKSLKRYIKLHSFKHIMNGFAVQTSASEARKLREAEGVKLVERDRGVRKMTTYTPEFLGMMPYKSRVWKKKTDKLLDGGEGIVIGIVDSGIDPTHPSFGGFDDDFNGNVSKDDELLFCGVCEKGPFFPSTSCNGKIVSGRFFSAGAQAVAKLDSSVDFLSPFDAEGHGSHVASIAAGNAGVPVIVNGFFYGLASGMAPRARIAVYKAVYPTVATLTDVVSAIDQAVADRVDILALSVGPNEPPEAGFTFLSIYDIAILSATRAGILVVQAAGNNGPTRATVVSYSPWAVGVAASGTDRVYPASLILGNGQKVGGLGLSGPTLGSEFFLHKLVLAKDAMKDPNIPNYSEECQYPEAFDPNVVQNSIVICSFSQGFLNGTSSLTAIIHTATTLRFMGFVLIANPNYGDFIAEPIPFRVPGILIPNVSDSKVILKYYEENTCKDRRGIVTKFKGKAGIGEGRVASFGGQAPTVSRFSSRGPDYMNSNRTAADVLKPDILAPGHQIWAAWSPLSASEPLLKGYQFALLSGTSMAAPHIVGIAALIKQKNPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHSLYPSTPFDLGAGLVSPTNALDPGLVFPAEHEDYINFLCSLPGADPAVIKSITGGQCNGSLPQQHPADLNLPSVTISSLVGHQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPWFTIAPEGVQNLEIQINVTHKMNHFTFGEIVLTGSLNHIARIPLSVLAVSLS 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35427627 35434510 + Maker00019927 Lcy5g1477 633292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1477 756 CDD PA_subtilisin_like 312 447 - -
Lcy5g1477 756 SUPERFAMILY Subtilisin-like 59 613 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy5g1477 756 Gene3D - 306 472 - -
Lcy5g1477 756 Gene3D Peptidase S8/S53 domain 90 622 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy5g1477 756 Gene3D - 626 753 - -
Lcy5g1477 756 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 17 709 IPR045051 -
Lcy5g1477 756 CDD Peptidases_S8_3 56 571 IPR034197 -
Lcy5g1477 756 ProSitePatterns Serine proteases, subtilase family, serine active site. 535 545 IPR023828 -
Lcy5g1477 756 Pfam Subtilase family 88 576 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy5g1477 756 Pfam Fibronectin type-III domain 656 750 IPR041469 -
Lcy5g1477 756 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 93 104 IPR023827 -
Lcy5g1477 756 ProSitePatterns Serine proteases, subtilase family, histidine active site. 176 186 IPR022398 -
Lcy5g1477 756 PRINTS Subtilisin serine protease family (S8) signature 172 185 IPR015500 -
Lcy5g1477 756 PRINTS Subtilisin serine protease family (S8) signature 534 550 IPR015500 -
Lcy5g1477 756 PRINTS Subtilisin serine protease family (S8) signature 88 107 IPR015500 -
Lcy5g1477 756 ProSiteProfiles Serine proteases, subtilase domain profile. 64 609 - -
Lcy5g1477 756 Pfam Peptidase inhibitor I9 6 57 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1615 Lcy-Chr4:40919563 Lcy5g1477 Lcy-Chr5:35427627 5.83E-193 dispersed
Lcy4g1616 Lcy-Chr4:40932639 Lcy5g1477 Lcy-Chr5:35427627 4.25E-13 dispersed
Lcy5g1477 Lcy-Chr5:35427627 Lcy3g2276 Lcy-Chr3:49588054 8.49E-91 dispersed
Lcy5g1477 Lcy-Chr5:35427627 Lcy9g0103 Lcy-Chr9:2228919 3.81E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1477 - - - 0.0