Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1479 ATGTGCCCAGGGTCGACCTCGGCCAAGGCCAAGGTCGAAGCCCAATCCCCTCTACCCTTTGTCTTTTCGGTGGTCGGTTCTCAATTGTATCCTAGGTTGGTGTTGCGTGTCCTCGTCGGCTCCTTGTCTTTTGAGATGGGTAACAGAGCACTGCCGAATGTGTTTGGAGCTCTAATGGCTTTGTGGGATTTCTGCTTGCTGTTTTTCTTCTTGATCTTTGCTTCTATTCCACCTGCTTTTGCTGTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAGTGGCGGCGATCCATGTGCAGAGTCATGGAAAGGAGTGACCTGTGAAGGGTCTGCAGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGGACGATGGGTTATGCGCTCTCAAGTCTCTTGTCATTGAAAAATCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCAAACCTCACGAGCCTAAATATGGCAAAAAACAACTTAAGTGGTAATCTTCCTTATTCATTTTCCACTATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGTTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCTTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCTAATTCCTTGAGCTCATTATCCAATGTTTCATCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATTGAAAATTTCATATACGATGGAAATTCATTTGCCGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCTCCTCCTGGTAGATCCCGTAACGGCCCCAGACATCCTGGGTCTGGCGGTGGCACACATACTGCCCCAAGTTCTGATAGCAGCTCGTCCCACTCGAACAAAGGCTTGTCAGTTTTGGCTATAGTTGGAATTATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCCGTATGCATCCAGAAGAGAAAACGGAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCCGTTGCAGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACCGCTTCTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGAGTTCCCAAACGGGAAGATAATGGCGATTAAGAAAATCGACAATTCAGCATTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCGAGATTGAGGCATACAAACATCGTCACACTAAATGGTTATTGTGCGGAGCATGGGCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTATGCTGAAGATAGTAGTAAGACACTGACTTGGAATGCACGTGTCAGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCCGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCTCATTTGTCAGATTGCGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGGTATCTACTCAGATGGTTGGTTCCTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGCGATGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTTTATCGCGCTTTGCCGACATAATCGCTCTCTGTGTTCAGCCCGAACCCGAATTTCGACCTCCGATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGCGATGAGTCAGGTTTCACTTACAAAACGCCCGACCACGATGCAGTTGAGTTGCCATTTTGA 2310 44.72 MCPGSTSAKAKVEAQSPLPFVFSVVGSQLYPRLVLRVLVGSLSFEMGNRALPNVFGALMALWDFCLLFFFLIFASIPPAFAVTDASDVQALQVIYTSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLLSLKNLDMSDNNIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSFSTMASLNYLNMSHNLLVQAIGDVFTNLTTLGTLDLSFNNFTGDLPNSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFADSPAPPPPPFTPPPPGRSRNGPRHPGSGGGTHTAPSSDSSSSHSNKGLSVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITASSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHYAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHDAVELPF 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35449049 35457371 - Maker00019695 Lcy5g1479 633294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1479 769 Pfam Leucine Rich Repeat 269 289 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 Pfam Leucine Rich Repeat 174 195 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 Pfam Leucine Rich Repeat 223 244 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 Pfam Leucine Rich Repeat 152 171 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 426 538 - -
Lcy5g1479 769 SUPERFAMILY L domain-like 83 290 - -
Lcy5g1479 769 CDD STKc_IRAK 467 738 - -
Lcy5g1479 769 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 539 749 - -
Lcy5g1479 769 ProSiteProfiles Protein kinase domain profile. 461 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1479 769 MobiDBLite consensus disorder prediction 303 321 - -
Lcy5g1479 769 MobiDBLite consensus disorder prediction 303 344 - -
Lcy5g1479 769 Pfam Protein kinase domain 464 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1479 769 SUPERFAMILY Protein kinase-like (PK-like) 441 735 IPR011009 -
Lcy5g1479 769 Gene3D Phosphorylase Kinase; domain 1 422 538 - -
Lcy5g1479 769 Gene3D Transferase(Phosphotransferase) domain 1 539 763 - -
Lcy5g1479 769 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 82 740 IPR046959 -
Lcy5g1479 769 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Lcy5g1479 769 Gene3D Ribonuclease Inhibitor 84 310 IPR032675 -
Lcy5g1479 769 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 84 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0086 Lcy-Chr13:874957 Lcy5g1479 Lcy-Chr5:35449049 5.04E-169 dispersed
Lcy1g0371 Lcy-Chr1:3299577 Lcy5g1479 Lcy-Chr5:35449049 1.11E-103 dispersed
Lcy3g2287 Lcy-Chr3:49700726 Lcy5g1479 Lcy-Chr5:35449049 1.67E-143 dispersed
Lcy4g0624 Lcy-Chr4:7445231 Lcy5g1479 Lcy-Chr5:35449049 1.57E-122 dispersed
Lcy5g0631 Lcy-Chr5:7729724 Lcy5g1479 Lcy-Chr5:35449049 2.89E-132 dispersed
Lcy5g0632 Lcy-Chr5:7753399 Lcy5g1479 Lcy-Chr5:35449049 1.85E-85 dispersed
Lcy5g1479 Lcy-Chr5:35449049 Lcy3g1489 Lcy-Chr3:41721369 7.64E-80 dispersed
Lcy2g2014 Lcy-Chr2:38132784 Lcy5g1479 Lcy-Chr5:35449049 6.33E-78 wgd
Lcy5g1479 Lcy-Chr5:35449049 Lcy9g0711 Lcy-Chr9:24217776 2.29E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65936 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1479 - - - 0.0