Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1479 ATGTGCCCAGGGTCGACCTCGGCCAAGGCCAAGGTCGAAGCCCAATCCCCTCTACCCTTTGTCTTTTCGGTGGTCGGTTCTCAATTGTATCCTAGGTTGGTGTTGCGTGTCCTCGTCGGCTCCTTGTCTTTTGAGATGGGTAACAGAGCACTGCCGAATGTGTTTGGAGCTCTAATGGCTTTGTGGGATTTCTGCTTGCTGTTTTTCTTCTTGATCTTTGCTTCTATTCCACCTGCTTTTGCTGTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAGTGGCGGCGATCCATGTGCAGAGTCATGGAAAGGAGTGACCTGTGAAGGGTCTGCAGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGGACGATGGGTTATGCGCTCTCAAGTCTCTTGTCATTGAAAAATCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCAAACCTCACGAGCCTAAATATGGCAAAAAACAACTTAAGTGGTAATCTTCCTTATTCATTTTCCACTATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGTTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCTTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCTAATTCCTTGAGCTCATTATCCAATGTTTCATCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATTGAAAATTTCATATACGATGGAAATTCATTTGCCGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCTCCTCCTGGTAGATCCCGTAACGGCCCCAGACATCCTGGGTCTGGCGGTGGCACACATACTGCCCCAAGTTCTGATAGCAGCTCGTCCCACTCGAACAAAGGCTTGTCAGTTTTGGCTATAGTTGGAATTATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCCGTATGCATCCAGAAGAGAAAACGGAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCCGTTGCAGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACCGCTTCTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGAGTTCCCAAACGGGAAGATAATGGCGATTAAGAAAATCGACAATTCAGCATTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCGAGATTGAGGCATACAAACATCGTCACACTAAATGGTTATTGTGCGGAGCATGGGCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTATGCTGAAGATAGTAGTAAGACACTGACTTGGAATGCACGTGTCAGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCCGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCTCATTTGTCAGATTGCGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGGTATCTACTCAGATGGTTGGTTCCTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGCGATGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTTTATCGCGCTTTGCCGACATAATCGCTCTCTGTGTTCAGCCCGAACCCGAATTTCGACCTCCGATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGCGATGAGTCAGGTTTCACTTACAAAACGCCCGACCACGATGCAGTTGAGTTGCCATTTTGA 2310 44.72 MCPGSTSAKAKVEAQSPLPFVFSVVGSQLYPRLVLRVLVGSLSFEMGNRALPNVFGALMALWDFCLLFFFLIFASIPPAFAVTDASDVQALQVIYTSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLLSLKNLDMSDNNIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSFSTMASLNYLNMSHNLLVQAIGDVFTNLTTLGTLDLSFNNFTGDLPNSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFADSPAPPPPPFTPPPPGRSRNGPRHPGSGGGTHTAPSSDSSSSHSNKGLSVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITASSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHYAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHDAVELPF 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35449049 35457371 - Maker00019695 Lcy5g1479 633294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1479 769 Pfam Leucine Rich Repeat 269 289 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 Pfam Leucine Rich Repeat 174 195 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 Pfam Leucine Rich Repeat 223 244 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 Pfam Leucine Rich Repeat 152 171 IPR001611 GO:0005515(InterPro)
Lcy5g1479 769 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 426 538 - -
Lcy5g1479 769 SUPERFAMILY L domain-like 83 290 - -
Lcy5g1479 769 CDD STKc_IRAK 467 738 - -
Lcy5g1479 769 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 539 749 - -
Lcy5g1479 769 ProSiteProfiles Protein kinase domain profile. 461 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1479 769 MobiDBLite consensus disorder prediction 303 321 - -
Lcy5g1479 769 MobiDBLite consensus disorder prediction 303 344 - -
Lcy5g1479 769 Pfam Protein kinase domain 464 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1479 769 SUPERFAMILY Protein kinase-like (PK-like) 441 735 IPR011009 -
Lcy5g1479 769 Gene3D Phosphorylase Kinase; domain 1 422 538 - -
Lcy5g1479 769 Gene3D Transferase(Phosphotransferase) domain 1 539 763 - -
Lcy5g1479 769 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 82 740 IPR046959 -
Lcy5g1479 769 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Lcy5g1479 769 Gene3D Ribonuclease Inhibitor 84 310 IPR032675 -
Lcy5g1479 769 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 84 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1479 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0086 Lcy-Chr13:874957 Lcy5g1479 Lcy-Chr5:35449049 5.04E-169 dispersed
Lcy1g0371 Lcy-Chr1:3299577 Lcy5g1479 Lcy-Chr5:35449049 1.11E-103 dispersed
Lcy3g2287 Lcy-Chr3:49700726 Lcy5g1479 Lcy-Chr5:35449049 1.67E-143 dispersed
Lcy4g0624 Lcy-Chr4:7445231 Lcy5g1479 Lcy-Chr5:35449049 1.57E-122 dispersed
Lcy5g0631 Lcy-Chr5:7729724 Lcy5g1479 Lcy-Chr5:35449049 2.89E-132 dispersed
Lcy5g0632 Lcy-Chr5:7753399 Lcy5g1479 Lcy-Chr5:35449049 1.85E-85 dispersed
Lcy5g1479 Lcy-Chr5:35449049 Lcy3g1489 Lcy-Chr3:41721369 7.64E-80 dispersed
Lcy2g2014 Lcy-Chr2:38132784 Lcy5g1479 Lcy-Chr5:35449049 6.33E-78 wgd
Lcy5g1479 Lcy-Chr5:35449049 Lcy9g0711 Lcy-Chr9:24217776 2.29E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy5g1479 . 446 739 Strubbelig Receptor Gene Family AT1G11130 53.4 6.4e-85 312.8
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy13g0086 . 149 831 Strubbelig Receptor Gene Family AT1G53730 60.9 1.7e-205 713.4
Lcy3g2287 . 60 745 Strubbelig Receptor Gene Family AT1G53730 60.9 6.1e-179 625.2
Lcy10g0819 . 5 681 Strubbelig Receptor Gene Family AT1G53730 50.7 5.5e-156 548.9
Lcy13g0086 . 157 835 Strubbelig Receptor Gene Family AT3G14350 52.3 3.8e-178 622.5
Lcy3g2287 . 80 743 Strubbelig Receptor Gene Family AT3G14350 56.8 5.7e-158 555.4
Lcy5g1479 . 394 770 Strubbelig Receptor Gene Family AT4G22130 82.0 1.4e-175 613.6
Lcy13g0086 . 519 847 Strubbelig Receptor Gene Family AT4G22130 63.7 2.9e-120 429.9
Lcy3g2287 . 438 751 Strubbelig Receptor Gene Family AT4G22130 65.8 2.1e-118 423.7
Lcy4g0624 . 369 664 Strubbelig Receptor Gene Family AT4G22130 62.0 2.4e-106 383.6
Lcy10g0819 . 350 695 Strubbelig Receptor Gene Family AT4G22130 53.1 7.5e-100 362.1
Lcy5g0631 . 360 682 Strubbelig Receptor Gene Family AT4G22130 52.9 6.1e-94 342.4
Lcy1g0371 . 418 685 Strubbelig Receptor Gene Family AT4G22130 59.3 1.7e-88 324.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65936 None None None None Lcy PK