Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1479 | ATGTGCCCAGGGTCGACCTCGGCCAAGGCCAAGGTCGAAGCCCAATCCCCTCTACCCTTTGTCTTTTCGGTGGTCGGTTCTCAATTGTATCCTAGGTTGGTGTTGCGTGTCCTCGTCGGCTCCTTGTCTTTTGAGATGGGTAACAGAGCACTGCCGAATGTGTTTGGAGCTCTAATGGCTTTGTGGGATTTCTGCTTGCTGTTTTTCTTCTTGATCTTTGCTTCTATTCCACCTGCTTTTGCTGTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAGTGGCGGCGATCCATGTGCAGAGTCATGGAAAGGAGTGACCTGTGAAGGGTCTGCAGTTGTCTCCATTGAGATTTCTGGGTTAGGGCTGAATGGGACGATGGGTTATGCGCTCTCAAGTCTCTTGTCATTGAAAAATCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCAAACCTCACGAGCCTAAATATGGCAAAAAACAACTTAAGTGGTAATCTTCCTTATTCATTTTCCACTATGGCTTCTCTCAATTATCTGAATATGAGCCATAATTTGCTAGTTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCTTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCTAATTCCTTGAGCTCATTATCCAATGTTTCATCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATTGAAAATTTCATATACGATGGAAATTCATTTGCCGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCTCCTCCTGGTAGATCCCGTAACGGCCCCAGACATCCTGGGTCTGGCGGTGGCACACATACTGCCCCAAGTTCTGATAGCAGCTCGTCCCACTCGAACAAAGGCTTGTCAGTTTTGGCTATAGTTGGAATTATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCCGTATGCATCCAGAAGAGAAAACGGAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCCGTTGCAGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACCGCTTCTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGAGTTCCCAAACGGGAAGATAATGGCGATTAAGAAAATCGACAATTCAGCATTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCGAGATTGAGGCATACAAACATCGTCACACTAAATGGTTATTGTGCGGAGCATGGGCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTATGCTGAAGATAGTAGTAAGACACTGACTTGGAATGCACGTGTCAGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCCGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCTCATTTGTCAGATTGCGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGGTATCTACTCAGATGGTTGGTTCCTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGCGATGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTTTATCGCGCTTTGCCGACATAATCGCTCTCTGTGTTCAGCCCGAACCCGAATTTCGACCTCCGATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGCGATGAGTCAGGTTTCACTTACAAAACGCCCGACCACGATGCAGTTGAGTTGCCATTTTGA | 2310 | 44.72 | MCPGSTSAKAKVEAQSPLPFVFSVVGSQLYPRLVLRVLVGSLSFEMGNRALPNVFGALMALWDFCLLFFFLIFASIPPAFAVTDASDVQALQVIYTSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSLLSLKNLDMSDNNIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSFSTMASLNYLNMSHNLLVQAIGDVFTNLTTLGTLDLSFNNFTGDLPNSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFADSPAPPPPPFTPPPPGRSRNGPRHPGSGGGTHTAPSSDSSSSHSNKGLSVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITASSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHYAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHDAVELPF | 769 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35449049 | 35457371 | - | Maker00019695 | Lcy5g1479 | 633294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1479 | 769 | Pfam | Leucine Rich Repeat | 269 | 289 | IPR001611 | GO:0005515(InterPro) | |
Lcy5g1479 | 769 | Pfam | Leucine Rich Repeat | 174 | 195 | IPR001611 | GO:0005515(InterPro) | |
Lcy5g1479 | 769 | Pfam | Leucine Rich Repeat | 223 | 244 | IPR001611 | GO:0005515(InterPro) | |
Lcy5g1479 | 769 | Pfam | Leucine Rich Repeat | 152 | 171 | IPR001611 | GO:0005515(InterPro) | |
Lcy5g1479 | 769 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 426 | 538 | - | - | |
Lcy5g1479 | 769 | SUPERFAMILY | L domain-like | 83 | 290 | - | - | |
Lcy5g1479 | 769 | CDD | STKc_IRAK | 467 | 738 | - | - | |
Lcy5g1479 | 769 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 539 | 749 | - | - | |
Lcy5g1479 | 769 | ProSiteProfiles | Protein kinase domain profile. | 461 | 738 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1479 | 769 | MobiDBLite | consensus disorder prediction | 303 | 321 | - | - | |
Lcy5g1479 | 769 | MobiDBLite | consensus disorder prediction | 303 | 344 | - | - | |
Lcy5g1479 | 769 | Pfam | Protein kinase domain | 464 | 733 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1479 | 769 | SUPERFAMILY | Protein kinase-like (PK-like) | 441 | 735 | IPR011009 | - | |
Lcy5g1479 | 769 | Gene3D | Phosphorylase Kinase; domain 1 | 422 | 538 | - | - | |
Lcy5g1479 | 769 | Gene3D | Transferase(Phosphotransferase) domain 1 | 539 | 763 | - | - | |
Lcy5g1479 | 769 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 82 | 740 | IPR046959 | - | |
Lcy5g1479 | 769 | Pfam | Leucine rich repeat N-terminal domain | 85 | 124 | IPR013210 | - | |
Lcy5g1479 | 769 | Gene3D | Ribonuclease Inhibitor | 84 | 310 | IPR032675 | - | |
Lcy5g1479 | 769 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 84 | 311 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0086 | Lcy-Chr13:874957 | Lcy5g1479 | Lcy-Chr5:35449049 | 5.04E-169 | dispersed | |
Lcy1g0371 | Lcy-Chr1:3299577 | Lcy5g1479 | Lcy-Chr5:35449049 | 1.11E-103 | dispersed | |
Lcy3g2287 | Lcy-Chr3:49700726 | Lcy5g1479 | Lcy-Chr5:35449049 | 1.67E-143 | dispersed | |
Lcy4g0624 | Lcy-Chr4:7445231 | Lcy5g1479 | Lcy-Chr5:35449049 | 1.57E-122 | dispersed | |
Lcy5g0631 | Lcy-Chr5:7729724 | Lcy5g1479 | Lcy-Chr5:35449049 | 2.89E-132 | dispersed | |
Lcy5g0632 | Lcy-Chr5:7753399 | Lcy5g1479 | Lcy-Chr5:35449049 | 1.85E-85 | dispersed | |
Lcy5g1479 | Lcy-Chr5:35449049 | Lcy3g1489 | Lcy-Chr3:41721369 | 7.64E-80 | dispersed | |
Lcy2g2014 | Lcy-Chr2:38132784 | Lcy5g1479 | Lcy-Chr5:35449049 | 6.33E-78 | wgd | |
Lcy5g1479 | Lcy-Chr5:35449049 | Lcy9g0711 | Lcy-Chr9:24217776 | 2.29E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65936 | None | None | None | None | Lcy | PK |
Pathway information
