Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1545 ATGGCCGCAAAAGATTCAGAGCAAGTCTTGGATGTGCAGTCGGTCGTCGAAGCAGTAGTTACAGACCAAGACGCCGATGTTCCAAGTTATGAAGTAGAAAGCCTCTGCATGCGCTGCGGAGAAAACGGGACAACAAGATTTTTGTTGACTTTAATTCCGCACTTCAGAAAGATCTTGCTATCGGCCTTTGAATGTCCACATTGTGGTGAGAGGAATAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTCTTTGGAGGTTCCTGCTGGCGACCAGAAGATGCTCAATCGACAAGTGGTGAAATCTGAATCTGCTATTATTAAGATCCCTGAATTGGACTTTGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACAGTGGAAGGTATATTGGTACGAGCTGTGGATGGATTGGAAGCCCTACAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTAAAACTGAAAGCTTGTGCTGTAGGAGATTCATCTTTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCATCCAAGGATCCATCATTAAGTATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTAGGTTATTATGTTGAATCATCACAATCAGAAGAAGGCGAGGGCGGAGCATCAACTAGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAGCAGCTGGGCATCGGGCAATAGCTCAGAGTAACAGTGCCGAGATCGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCATGTGCAGCTAGGTGTGAGACTCGAATGTTTGTAACCGAAATTCCCTACTTCCAAGAAGTGATCGTCATGGCATCTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGTTGAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTGAAGGATGTTAGAGATCTCAGTCGAGATGTGATAAAGCTACCTCATGGTGTAACCTTAGCAATGTGTTCTGTACTTACTCTTTATATGATGTATGTGCTAATTGGATTGGAGGGCTTTTCTTCAGATACTGCAAGTGTGAGAGTCCCAGATCTTGACTTGGAGCTGACCAGTGGCACTCTTGGGGGAATTGTTACAACGGTTGAAGGTTTAATCACAAAAATAAGTGAAAGTAAGTATATTTAG 1284 44.86 MAAKDSEQVLDVQSVVEAVVTDQDADVPSYEVESLCMRCGENGTTRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYSLEVPAGDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAVDGLEALQEERRKVDPQTAEAIDQFLLKLKACAVGDSSFSFILDDPAGNSFIENPFAPSKDPSLSIKFYERTPEQQASLGYYVESSQSEEGEGGASTSGVDASNQVRGEAHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAARCETRMFVTEIPYFQEVIVMASTCDACGYRSSELKPGGRIPEKGKIISLCVKDVRDLSRDVIKLPHGVTLAMCSVLTLYMMYVLIGLEGFSSDTASVRVPDLDLELTSGTLGGIVTTVEGLITKISESKYI 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36717040 36724559 - Maker00019793 Lcy5g1545 633360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1545 427 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Lcy5g1545 427 Gene3D ZPR1, A/B domain 335 425 IPR042451 -
Lcy5g1545 427 Pfam ZPR1 zinc-finger domain 283 338 IPR004457 GO:0008270(InterPro)
Lcy5g1545 427 Pfam ZPR1 zinc-finger domain 31 83 IPR004457 GO:0008270(InterPro)
Lcy5g1545 427 FunFam zinc finger protein ZPR1 80 221 - -
Lcy5g1545 427 FunFam Zinc finger protein ZPR1 280 334 - -
Lcy5g1545 427 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Lcy5g1545 427 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Lcy5g1545 427 FunFam Zinc finger protein ZPR1 24 79 - -
Lcy5g1545 427 SMART zpr1 34 194 IPR004457 GO:0008270(InterPro)
Lcy5g1545 427 SMART zpr1 289 427 IPR004457 GO:0008270(InterPro)
Lcy5g1545 427 NCBIfam ZPR1 zinc finger domain 36 219 IPR004457 GO:0008270(InterPro)
Lcy5g1545 427 MobiDBLite consensus disorder prediction 223 243 - -
Lcy5g1545 427 Pfam ZPR1 jelly-roll domain 99 221 - -
Lcy5g1545 427 Pfam ZPR1 jelly-roll domain 388 423 - -
Lcy5g1545 427 PANTHER ZINC FINGER PROTEIN ZPR1 6 359 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1545 K06874 - csv:101208000 701.049