Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1554 ATGGCATCCTCCTCCACTTCACTTCTCAACTTCCTCTCCATCTTCTTCTTTCTCATCTGTTTTTTCACAACCCAAGCCGTTTCACAATCTGATGAATGTCAAATAACAACCAACGAATGCACCAACAAAGACAAGGCCTTGCGTCTTAAAATCATTGCCATTTTCTCGATCCTCATTGCGAGTGTGATCGGCGTCTGCTCGCCGCTCGTCACTCGGTCGATCCCGACGTTGCACCCCGATCGGAACATGTTCATCATCCTCAAAGCCTTCGCTGCTGGCATCATTCTCGCCACCGGTTTCATGCATGTTTTGCCCGATTCTTTCGAGATGCTTTGGTCGAATTGTCTGAAGGAGAATCCGTGGCATAAGTTTCCCTTTTCGGGTTTTGTCGCAATGATGTCCGCGATAGTCACCCTCATGGTGGATTCCATGGCTACTAGTTTGTATACCAAGAAACACACCGAAGTTATGCCTGAGAATTCTCAAGGAGGAGGAGGAGATCTTGAGCTGCCTGTGGTCAGTGGTGGCCATTTCCATGGCCACCATCATCAAGACACCAAAGAAATTAATGCTGGTTCTCAACTATTGCGCTATCGTGTTATTGCCATGGTTTTGGAATTGGGAATTGTGGTTCATTCTGTTGTGATTGGACTTTCACTTGGAGCAACAAATGATACATGCACAATCAAAGGTCTAGTGGCAGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGATGTATTCTTCAGGCTGAATACAAGTGGATGAAGAAGGCAATAATGGCATTCTTCTTCTCAGTGACAACCCCATTTGGGATAGCCCTAGGAATAGGGTTGTCAAGGACATACAAAGAAAACAGCCCTAGTGCCCTAATCACTGTGGGGTTGCTGAATGCTTCTTCAGCTGGCCTTCTCATCTACATGGCTTTGGTGGATCTTCTTTCTGCTGACTTTATGGGGCCAAAGTTGCAAGGCAGCATCAAACTCCAAGTCAAATCCTACATTGCTGTGATCTTGGGAGCTGGTGGCATGTCCTTAATGGCAAAGTGGGCTTGA 1065 46.38 MASSSTSLLNFLSIFFFLICFFTTQAVSQSDECQITTNECTNKDKALRLKIIAIFSILIASVIGVCSPLVTRSIPTLHPDRNMFIILKAFAAGIILATGFMHVLPDSFEMLWSNCLKENPWHKFPFSGFVAMMSAIVTLMVDSMATSLYTKKHTEVMPENSQGGGGDLELPVVSGGHFHGHHHQDTKEINAGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMAFFFSVTTPFGIALGIGLSRTYKENSPSALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYIAVILGAGGMSLMAKWA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36872847 36875681 + Maker00019929 Lcy5g1554 633369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1554 354 NCBIfam ZIP zinc/iron transport family 36 354 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Lcy5g1554 354 PANTHER ZINC/IRON TRANSPORTER 43 353 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Lcy5g1554 354 Pfam ZIP Zinc transporter 48 351 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0331 Lcy-Chr1:2906363 Lcy5g1554 Lcy-Chr5:36872847 3.12E-128 dispersed
Lcy5g1554 Lcy-Chr5:36872847 Lcy6g0237 Lcy-Chr6:2103732 3.04E-113 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1554 K14709 - csv:101221552 619.002