Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1567 ATGAAGGAGAACAGAAAACAGGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGATGCGCAGAGGAATGCGTATTTGCGCCATACTTCCCCGCAGAGGAACCCCACAAGTTCGCCAATGTTCACAAAGTCTTCGGCGCCAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAGTTCACCAACGAGGAGATGCAGTAAGTAGTTTGGTGTACGAAGCAAACGCTCGAGTGCGCGACCCAGTCTACGGGTGCGTCGGAGCCATATCATCTCTGCAGCAGCAGATAGATGCCCTCCAAACCCAGCTGGCTCTAGCTCAAGCCGAGGTGGTGCACCTGCGGGTGCGTCAGACAGCATCATTCTCAAACTATGGGCTAAGCCCAACAAGTCCAAGTAACAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAATGTGGTGA 504 54.17 MKENRKQGGAAPCAACKLLRRRCAEECVFAPYFPAEEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37143643 37147565 - Maker00009346 Lcy5g1567 633382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1567 167 Coils Coil 91 118 - -
Lcy5g1567 167 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Lcy5g1567 167 MobiDBLite consensus disorder prediction 126 149 - -
Lcy5g1567 167 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Lcy5g1567 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 132 - -
Lcy5g1567 167 MobiDBLite consensus disorder prediction 126 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0786 Lcy-Chr4:9452814 Lcy5g1567 Lcy-Chr5:37143643 1.03E-59 dispersed
Lcy5g1567 Lcy-Chr5:37143643 Lcy8g1638 Lcy-Chr8:42979317 1.02E-77 dispersed
Lcy5g1567 Lcy-Chr5:37143643 Lcy9g0581 Lcy-Chr9:18811423 3.56E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20117 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1567 - - - 0.0