Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1659 ATGTCTTTGCTCAGACCTTACGGAAAGGTCGACGAAACCGACCAAATGAGGCTCGACGCTCGCCGGAGAACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTAGGTGTTGTTGTTGCTGTTGTGTTTGGGACTAGAAATGGTTCCAAGAATGATGACAGTAACAATAACAATGGTGCTCTTTCAACTTCCATCAAAGCAGTTTGTGATGTGACTTTGTATCCTGATACTTGTTACAATGCTTTTGGTCCTTTAGCTAACTCGAGCCGCCTCGACCCCGGTCAGATCTCCAAGCTTTCGGTTCAATTGGCGCTCGACGAACTGTCGCGAGTGGCTGACTACATTCTTCAGCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGCAAAGTTGTCATGAACTCTTGGACTTGGCATTGGATCATTTGAACATGACAATGTCTTCTAGTGACATTACATTGCTGAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGCATCGACGGCCTCAACGATGTCGATCCGGCTTTGACGAACATCATTGCGAATTACTTGAAGAACTCCACTGAATTGACCAGCAATGGCCTTGCCATTGTGTCCTTCTTTTCGAAGCTTACGGATTCTTTCAATCTACGACGGTTGATGAGTTATGAAGATCACCAAAGCAATGGAGATTGGGCGCGCCCGATACTCCGAAAGCTAGCTCAGAGCGACCTCAGGAAGCAGGCTGACATTGTCGTAGCAGCCGACGGTTCGGGGAAGTACAAAACAATCAATGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAGGGAACTTATAAGGAGAATGTTGAAGTTGTGAAGAACAAATGGAATGTGGTGATGATTGGTGATGGAATGACTTCAACCATTGTAACTGGCAGCCTCAACTTCATAGATGGAACTCCAACATTTTCAACTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACGGCTGGACCGAGCAAACACCAAGCGGTTGCTCTGATGTCGACGTCCGACCAATCGATCTTCTACCGTTGCCAGATGGATGCATACCAAGACACTCTCTACGCGCACTCCAACCGCCAATTCTACCGCGAATGCAACGTTTTCGGCACGGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCACCATTGCTCCCAAGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAGGTTTGATCCCAATCAAAACACTGGCATTTCGATACAAGACTCTTTGGTCCGACCGTTCGAAAACTTGAAAACGACCGAAACTTACCTCGGTCGTCCGTGGAAGAACTACTCGACGACCGTGTTTATGCAGAGCTACCTGGGGAGCTTGATTCACCCAAATGGTTGGCTGCCTTGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAATAGAGTCAAATGGAAAGGTTTGAAGAACATTGACATCAAAACTGCCAAAAAGTTCACAGTTTCCTCTTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTCCCCTTCAAAGCCAGCCTTTGA 1701 45.97 MSLLRPYGKVDETDQMRLDARRRTRKRIAVIVLSSVVLVGVVVAVVFGTRNGSKNDDSNNNNGALSTSIKAVCDVTLYPDTCYNAFGPLANSSRLDPGQISKLSVQLALDELSRVADYILQHAITNSTDNKTILALQSCHELLDLALDHLNMTMSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLNDVDPALTNIIANYLKNSTELTSNGLAIVSFFSKLTDSFNLRRLMSYEDHQSNGDWARPILRKLAQSDLRKQADIVVAADGSGKYKTINAALKAVPDKSKKRTVIYVKKGTYKENVEVVKNKWNVVMIGDGMTSTIVTGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCQMDAYQDTLYAHSNRQFYRECNVFGTVDFIFGNSAVVLQNCTIAPKLPLLGQKNTITAQGRFDPNQNTGISIQDSLVRPFENLKTTETYLGRPWKNYSTTVFMQSYLGSLIHPNGWLPWVGTSAPDTIFYAEFQNYGPGSSTANRVKWKGLKNIDIKTAKKFTVSSFIDGKDWISKAQVPFKASL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38789283 38791076 - Maker00035774 Lcy5g1659 633474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1659 566 FunFam Pectinesterase 254 566 - -
Lcy5g1659 566 NCBIfam pectinesterase inhibitor domain 53 215 IPR006501 GO:0004857(InterPro)
Lcy5g1659 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 219 IPR035513 -
Lcy5g1659 566 PANTHER PECTINESTERASE 27 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy5g1659 566 FunFam Pectinesterase 65 219 - -
Lcy5g1659 566 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Lcy5g1659 566 Gene3D - 255 566 IPR012334 -
Lcy5g1659 566 SMART PMEI_2 64 214 IPR006501 GO:0004857(InterPro)
Lcy5g1659 566 Pfam Pectinesterase 260 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy5g1659 566 CDD PMEI-like_3 71 220 - -
Lcy5g1659 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 218 IPR035513 -
Lcy5g1659 566 Pfam Plant invertase/pectin methylesterase inhibitor 68 214 IPR006501 GO:0004857(InterPro)
Lcy5g1659 566 SUPERFAMILY Pectin lyase-like 258 563 IPR011050 -
Lcy5g1659 566 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1659 Lcy-Chr5:38789283 Lcy6g0260 Lcy-Chr6:2261062 9.20E-124 dispersed
Lcy5g1659 Lcy-Chr5:38789283 Lcy13g0079 Lcy-Chr13:833308 6.16E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1659 - - - 0.0