Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1665 ATGAGTCATTTTTCAGTGGATTTCAGGAGACCTGAATCAGCTAAATGTAGATTGAAAGAGTTATTGCTTCAGAAAGATAATCAACTTTGTGCTGATTGTGGTGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATTTGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAGCGCACATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGAACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTGTGTCCAATCACTCTTCAAAGAGTCCTGAGGAGCCGAGTTATTTAAAAGAGATTGCTGATGGCTTTCGAAGCTCAAATTCTTCAAAGATATCATTGGCGACTCTTGGACGAGATCAGTGGCTAGCTATCCTGAAAGTCAATGTGATTAGAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGTAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCAGTTCCTCAGGAATATGGGCCCCTGAAGTTGGTAAGTTTTTGCAGTTGGTACTGGTAG 750 41.33 MSHFSVDFRRPESAKCRLKELLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGAHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPEPSASHEERSKFIRSKYELQEFLKPSLRIVSNHSSKSPEEPSYLKEIADGFRSSNSSKISLATLGRDQWLAILKVNVIRGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLVSFCSWYW 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38858268 38861927 - Maker00035930 Lcy5g1665 633480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1665 249 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 6 242 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lcy5g1665 249 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Lcy5g1665 249 CDD ArfGap 18 124 - -
Lcy5g1665 249 Gene3D Arf GTPase activating protein 4 136 IPR038508 -
Lcy5g1665 249 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Lcy5g1665 249 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096(InterPro)
Lcy5g1665 249 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Lcy5g1665 249 Pfam Putative GTPase activating protein for Arf 18 131 IPR001164 GO:0005096(InterPro)
Lcy5g1665 249 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Lcy5g1665 249 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Lcy5g1665 249 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Lcy5g1665 249 Pfam C2 domain 179 238 IPR000008 -
Lcy5g1665 249 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 169 235 IPR035892 -
Lcy5g1665 249 Gene3D C2 domain 160 245 IPR035892 -
Lcy5g1665 249 ProSiteProfiles C2 domain profile. 160 249 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1665 Lcy-Chr5:38858268 Lcy7g0692 Lcy-Chr7:6404255 2.37E-73 dispersed
Lcy5g2353 Lcy-Chr5:46363129 Lcy5g1665 Lcy-Chr5:38858268 2.00E-25 transposed
Lcy1g0121 Lcy-Chr1:1033618 Lcy5g1665 Lcy-Chr5:38858268 7.54E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1665 K12486 - csv:101211569 406.371