Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1666 ATGGCTCTTGTCATGCATAGAGATTCTTCGAATAAGCAGATGGATACAAGCAAGTACGTGAGATATACGCCTGAGCAAGTCGATGCGTTAGAGAGGGTTTATGCAGAATGTCCAAAGCCCAGTTCGTTGAGAAGGCAACAGCTCATTCGGGAGTGTCCCATTCTCTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAGAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCGATGAATAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTATGAGAACGGGTACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACGGACAATAGCTGTGAGTCCGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAACTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCAACGAAGGTGGCTGAAATTCTCAAAGATCGTCTATCATGGTTTCGTGACTGCCGCTGTGTTGATGTATTAAGTGTAATCTCTACAGGAAACGGGGGGACTATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCGGCAGCACGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCCTAGTGATATGTGAGAGATCATTGACGTCGTCTACTGGTGGCCCATCGGGGCCTCCTCCATCCAGTTTTGTAAGAGCTGAAATGCTTCCAAGTGGGTATCTTATTCGAGCTTGTGAGGGCGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGCCTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTGGCTGCCTTACGCTATGTTCGGCAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGGGGCCGCCAACCAGCTGTTTTAAGGACTTTCAGTCAAAGGCTCTGTAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTAGAGGATGTGACCGTTGTTATTAATTCATCTCCAAACAAATTCCTTGGTTCGCAATACAACACATCATTGTATCCTACTTTTGGAGGTGTGTTGTGTGCCAAGGCGTCAATGTTGCTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTGCGAGAGCATCGTTCAGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCGCATACTGTGGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGTGGACGAGATATGTACTTATTGCAGCTGTGTAGTGGAGTTGATGAAAATGCAATTGGTGCCAGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCGTTTGCCGATGATGCTCCCTTGTTGCCATCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACGGATGCACCTGCTGCTACCCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGCACTACTCGTCCAGGTGGTGAAAGTGATGCTACAAATTATAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGTGTGGCTGCCATGGCGAGACAATACGTGCGGACCGTTGTGGGATCAGTTCAGAGGGTTGCCATGGCTATTGCCCCCTCACAGCTTGGCTCCCAAATCAGTCCCAAAAGCCTTCCCGGCTCCCCGGAGGCTCTCACATTGGCCCAGTGGATCTCACGAAGCTACAGGATGCACACAGGGGCAGAGCTCTTTCAGGTTGAATCCCAGTCTGATGATGCTATCTTGAAGCAGCTTTGGCACCATTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTGTTCACATTTGCAAACCAAGCTGGACTCGACATGCTCGAAACTACCCTAGTAGCTCTTCAAGATATAATGCTTGACAAGATCCTCGACGATGCTGGTCGGAAGATACTTTGCTCCGAGTTCTCAAAGATAATGCAACAGGGATTTGCTTACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGACCGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTCAGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTCGTTAACTGGTCCTTTATGTGA 2535 47.26 MALVMHRDSSNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENAIGASAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGESDATNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGSQISPKSLPGSPEALTLAQWISRSYRMHTGAELFQVESQSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVQNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 38885621 38893724 + Maker00035948 Lcy5g1666 633481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1666 844 Gene3D - 9 84 - -
Lcy5g1666 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Lcy5g1666 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 844 IPR044830 GO:0003700(InterPro)
Lcy5g1666 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Lcy5g1666 844 CDD START_ArGLABRA2_like 160 375 - -
Lcy5g1666 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Lcy5g1666 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Lcy5g1666 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Lcy5g1666 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Lcy5g1666 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Lcy5g1666 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Lcy5g1666 844 Gene3D - 185 377 IPR023393 -
Lcy5g1666 844 Coils Coil 87 114 - -
Lcy5g1666 844 Pfam MEKHLA domain 699 843 IPR013978 -
Lcy5g1666 844 SUPERFAMILY Bet v1-like 166 376 - -
Lcy5g1666 844 CDD bZIP 70 109 - -
Lcy5g1666 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2146 Lcy-Chr3:48383582 Lcy5g1666 Lcy-Chr5:38885621 0 dispersed
Lcy5g1666 Lcy-Chr5:38885621 Lcy8g1904 Lcy-Chr8:45297684 0 dispersed
Lcy1g0128 Lcy-Chr1:1094770 Lcy5g1666 Lcy-Chr5:38885621 0 wgd
Lcy2g2020 Lcy-Chr2:38273288 Lcy5g1666 Lcy-Chr5:38885621 4.34E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20123 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1666 K09338 - csv:101211318 1603.57