Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1683 | ATGTTAGACGAGCTCGCCCGAGAATCAGACGGGGAGCTAGGTTACGAAGCAGCCGTTAATTCGAATTCCAGTCAGAATTCTATGAGCAGTGAAAGTTGCAGCAGTTTCAGTCGTCTCTCGTTCGATGCTGCGATCGATTTCCCTACCTCCCGATCCTCGCCGGAGAGTCTCGATTTGAAGCCTCACCGATCGTCTGATTTCGCTTACTCCGCCATTCGTCGCCGGAAATCCAAGCTTACTTTCCGTGATTTTCGCCTCCTCCGCCGCATCGGCGCCGGCGACATTGGCACCGTCTATTTATGTCAGTTGCGGAACTTGACCGACGGTTGCTACGATGACGAAGACGATGATCCGTGTCTGTACGCGATGAAAGTGGTGGATAAGGAGGCGTTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGGAAAATATTGAAGATGCTGGACCATCCGTTTTTGCCTACTCTCTACGCTGAGTTTGAGGCGTCGCATTTCTCTTGCATCGTTATGGAGTTCTGTTCCGGCGGCGACTTGCATTCTCTCCGCCATAAACAGCCGCGAAAACGCTTCTCTCTCAGCTCCGCAAGGTTTTATGCGGCTGAAGTTCTAGTTGCTTTAGAGTACCTTCACATGCTCGGAATCATCTACAGAGACCTTAAACCGGAGAATGTCCTCGTCCGATCAGACGGTCACATCATGCTCTCGGATTTCGATTTATCTCTCTGCTCCGACGCCATCCCCGCCGTTGAGTCGCCGGATTCCTCCCCCAATCCGGCATTCCCCGACGCGACGGCGTACCCCAGACCCAACACCGCCGCCGCCCCCTCGGTCACCTCGACCCCCTTTTCCTGCCTCTACAACCGGCTTTTCCGGTCACGCAAGGTCCAAACCCTGACCCCCAACTGGCTCTTCGTCGCCGAACCCGTCTCCGCCCGGTCCTGCTCCTTCGTCGGCACCCACGAGTACGTCTCGCCGGAAGTCGCCGCTGGCGGCTCCCATGGAAACGCCGTCGACTGGTGGGCCTTCGGTGTATTTCTCTACGAGCTGATCTACGGCCGTACCCCGTTCGCGGCCTCATCCAATGAGACGACGCTAAGAAACATCATAAAGAAGCCATTGACGTTTCCGACCAGTGCGTCCTCCGGCGCGCTTGAGCACCACGCGCGGGACCTCATATCCGGGTTGCTCAACAAGGACCCGACCCGAAGACTCGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCATTCTTCAAGGGCCTCAACTTCGCCCTCATACGGTCGCTCACTCCGCCGGAGGTCCCCGGCGTACGGCGGAGGAAGTCGATGCCGGCGCCGGTGTCCAAAACCAAGGACAAGGCAGCTCAGTCGGCCGGGTTCGATTACTTCTGA | 1401 | 57.03 | MLDELARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDFPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNLTDGCYDDEDDDPCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESPDSSPNPAFPDATAYPRPNTAAAPSVTSTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTSASSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKSMPAPVSKTKDKAAQSAGFDYF | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39130588 | 39134095 | + | Maker00035812 | Lcy5g1683 | 633498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1683 | 466 | SUPERFAMILY | Protein kinase-like (PK-like) | 63 | 437 | IPR011009 | - | |
Lcy5g1683 | 466 | MobiDBLite | consensus disorder prediction | 16 | 32 | - | - | |
Lcy5g1683 | 466 | Gene3D | Transferase(Phosphotransferase) domain 1 | 315 | 439 | - | - | |
Lcy5g1683 | 466 | PANTHER | FLIPPASE KINASE 1-RELATED | 30 | 450 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Lcy5g1683 | 466 | Gene3D | Phosphorylase Kinase; domain 1 | 82 | 174 | - | - | |
Lcy5g1683 | 466 | FunFam | protein kinase PINOID | 175 | 243 | - | - | |
Lcy5g1683 | 466 | MobiDBLite | consensus disorder prediction | 437 | 466 | - | - | |
Lcy5g1683 | 466 | ProSiteProfiles | Protein kinase domain profile. | 84 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1683 | 466 | FunFam | protein kinase PINOID 2 | 82 | 174 | - | - | |
Lcy5g1683 | 466 | Coils | Coil | 123 | 150 | - | - | |
Lcy5g1683 | 466 | SMART | serkin_6 | 84 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1683 | 466 | Pfam | Protein kinase domain | 85 | 242 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1683 | 466 | Pfam | Protein kinase domain | 315 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy5g1683 | 466 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 242 | - | - | |
Lcy5g1683 | 466 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 216 | 228 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy5g1683 | 466 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lcy5g1683 | 466 | CDD | STKc_phototropin_like | 82 | 444 | - | - | |
Lcy5g1683 | 466 | FunFam | serine/threonine-protein kinase D6PK-like | 313 | 439 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g2125 | Lcy-Chr4:47796637 | Lcy5g1683 | Lcy-Chr5:39130588 | 8.53E-132 | dispersed | |
Lcy5g1683 | Lcy-Chr5:39130588 | Lcy8g1981 | Lcy-Chr8:46074575 | 5.49E-119 | dispersed | |
Lcy5g1683 | Lcy-Chr5:39130588 | Lcy5g1341 | Lcy-Chr5:31986784 | 5.35E-121 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65939 | None | None | None | None | Lcy | PK |
Pathway information
