Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1683 ATGTTAGACGAGCTCGCCCGAGAATCAGACGGGGAGCTAGGTTACGAAGCAGCCGTTAATTCGAATTCCAGTCAGAATTCTATGAGCAGTGAAAGTTGCAGCAGTTTCAGTCGTCTCTCGTTCGATGCTGCGATCGATTTCCCTACCTCCCGATCCTCGCCGGAGAGTCTCGATTTGAAGCCTCACCGATCGTCTGATTTCGCTTACTCCGCCATTCGTCGCCGGAAATCCAAGCTTACTTTCCGTGATTTTCGCCTCCTCCGCCGCATCGGCGCCGGCGACATTGGCACCGTCTATTTATGTCAGTTGCGGAACTTGACCGACGGTTGCTACGATGACGAAGACGATGATCCGTGTCTGTACGCGATGAAAGTGGTGGATAAGGAGGCGTTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGGAAAATATTGAAGATGCTGGACCATCCGTTTTTGCCTACTCTCTACGCTGAGTTTGAGGCGTCGCATTTCTCTTGCATCGTTATGGAGTTCTGTTCCGGCGGCGACTTGCATTCTCTCCGCCATAAACAGCCGCGAAAACGCTTCTCTCTCAGCTCCGCAAGGTTTTATGCGGCTGAAGTTCTAGTTGCTTTAGAGTACCTTCACATGCTCGGAATCATCTACAGAGACCTTAAACCGGAGAATGTCCTCGTCCGATCAGACGGTCACATCATGCTCTCGGATTTCGATTTATCTCTCTGCTCCGACGCCATCCCCGCCGTTGAGTCGCCGGATTCCTCCCCCAATCCGGCATTCCCCGACGCGACGGCGTACCCCAGACCCAACACCGCCGCCGCCCCCTCGGTCACCTCGACCCCCTTTTCCTGCCTCTACAACCGGCTTTTCCGGTCACGCAAGGTCCAAACCCTGACCCCCAACTGGCTCTTCGTCGCCGAACCCGTCTCCGCCCGGTCCTGCTCCTTCGTCGGCACCCACGAGTACGTCTCGCCGGAAGTCGCCGCTGGCGGCTCCCATGGAAACGCCGTCGACTGGTGGGCCTTCGGTGTATTTCTCTACGAGCTGATCTACGGCCGTACCCCGTTCGCGGCCTCATCCAATGAGACGACGCTAAGAAACATCATAAAGAAGCCATTGACGTTTCCGACCAGTGCGTCCTCCGGCGCGCTTGAGCACCACGCGCGGGACCTCATATCCGGGTTGCTCAACAAGGACCCGACCCGAAGACTCGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCATTCTTCAAGGGCCTCAACTTCGCCCTCATACGGTCGCTCACTCCGCCGGAGGTCCCCGGCGTACGGCGGAGGAAGTCGATGCCGGCGCCGGTGTCCAAAACCAAGGACAAGGCAGCTCAGTCGGCCGGGTTCGATTACTTCTGA 1401 57.03 MLDELARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDFPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNLTDGCYDDEDDDPCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESPDSSPNPAFPDATAYPRPNTAAAPSVTSTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTSASSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKSMPAPVSKTKDKAAQSAGFDYF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39130588 39134095 + Maker00035812 Lcy5g1683 633498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1683 466 SUPERFAMILY Protein kinase-like (PK-like) 63 437 IPR011009 -
Lcy5g1683 466 MobiDBLite consensus disorder prediction 16 32 - -
Lcy5g1683 466 Gene3D Transferase(Phosphotransferase) domain 1 315 439 - -
Lcy5g1683 466 PANTHER FLIPPASE KINASE 1-RELATED 30 450 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy5g1683 466 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
Lcy5g1683 466 FunFam protein kinase PINOID 175 243 - -
Lcy5g1683 466 MobiDBLite consensus disorder prediction 437 466 - -
Lcy5g1683 466 ProSiteProfiles Protein kinase domain profile. 84 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1683 466 FunFam protein kinase PINOID 2 82 174 - -
Lcy5g1683 466 Coils Coil 123 150 - -
Lcy5g1683 466 SMART serkin_6 84 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1683 466 Pfam Protein kinase domain 85 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1683 466 Pfam Protein kinase domain 315 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1683 466 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Lcy5g1683 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1683 466 MobiDBLite consensus disorder prediction 1 32 - -
Lcy5g1683 466 CDD STKc_phototropin_like 82 444 - -
Lcy5g1683 466 FunFam serine/threonine-protein kinase D6PK-like 313 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2125 Lcy-Chr4:47796637 Lcy5g1683 Lcy-Chr5:39130588 8.53E-132 dispersed
Lcy5g1683 Lcy-Chr5:39130588 Lcy8g1981 Lcy-Chr8:46074575 5.49E-119 dispersed
Lcy5g1683 Lcy-Chr5:39130588 Lcy5g1341 Lcy-Chr5:31986784 5.35E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65939 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1683 - - - 0.0