Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1695 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGGCTCCGGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTCCCGGCTGTTGGCAGTCGGGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCGTCTACCAATAAAGAGGTGGATGCCCAGATCCCGAATTACCCGAGTTTACCTCCGCAGCTCATATGTCAACTTCACAACCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCCTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGCACTCCGAGTAGGCAGCCTACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTCTCTGTTCCTCGCCGTGCTGCAGAAAAAGTATTCCCCCCTTTGGACTTCTCCATGCAGCCTCCAGCCCAAGAGCTGATAGCGAGGGACCTACATGATAATGAGTGGAAGTTTAGACATATATTTCGTGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGCGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTTTTTATTTGGAATGAGAAGAACCAATTACTCCTCGGAATCAGGCGTGCAAACCGACCGCAAACTGTGATGCCTTCGTCCGTTTTATCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCCGCTCATGCAGCTGCTACCAATAGTCGGTTTACCATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGACCAAATATGTAAAGGCAGTCTACCATACTCGTGTTTCTGTTGGGATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGGACAATCACTGGCATTAGTGACTTGGATCCTGTTAGATGGCAAAATTCACATTGGCGCTCCGTCAAGGTTGGTTGGGATGAGTCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAGCCCTTGACCACATTTCCAATGTATCCATCACCATTTCCACTTCGACTGAAGCGACCATGGCCAACTGGACTGCCTTCTTTCGGCCTCAAGGATAGTGAGCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGCGATCGTGGCATCCAGTGTCTCAACTTTCAGGGAACTGGGGTCTCACCGTGGATGCAGCCGAGACTTGATACATCCATGATTGGTATGCAATCTGACGTGTATCAAGCCATGGCTGCTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCTATTCTGCAATTCCAGCAGCCTCAAGGTCTCCCTTGTCAGTCTTCTTCCTTGATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAACAGGCGTTTCTGCAATCCGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGGCTCAGGTTCAGGCTCAGCCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCTCAGCAGTCGTTCAATAATCAACAGCAGCAGCATCAACAGCAACCAAGGCAGCCACAGCCACTTGTTGATCATCAATCGATTCCTTGTACGATTCCTGCTATATCTCAGTTTGCTTCATGTTCACAATCCCAGTCACCGTCCCTGCAAACAGTTCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGGTCATTTGTCCAAGATGAATCATCTCAGCTTCTTAACCTTCAAAGAGCCAATTCAATAATTCCTTCAGCTGGCTGGCCTTCAAAGAGAGCTGCTATTGACCCTCTCTCTAATGGAGCTTCTCAGTATTTTCTTCCTCAAGTGGAAAATTTGGGAACATCGCAGAGTAGTATTTCTCAGAATACAGTTGCATTGCCACCCTTCCCTGGAAGGGAATGTTCTATTGATGATCGAGACTCGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTAGGCAATGATAGTGTTTCAACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACAATGACGTCCTCAAATTGCATCGATGAATCGGGTTTTCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCAAACGGAACCTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCATTAGATATAACCAAATTCAACAACTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGTGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTCGGAGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTATGGTGTATCAAAATACTTTCGCCGGAGGAAGTTCAGGATATGGGCAAACGAGGTTTAGAACTTCTGAACTCAGTGCCAATCCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGTCGACAGGACTCGAGAAATTTGATTTCAGGAATAACCTCTGTCGGGCCTCTCGACTACTGA 2724 47.47 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGLKDSELGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDTSMIGMQSDVYQAMAAAALQEMRAIDYSKIAPASILQFQQPQGLPCQSSSLMQPQMLHQSQPQQAFLQSVQENQQHSQSQAQVQAQPQTQSHHLQPQLQPQQSFNNQQQQHQQQPRQPQPLVDHQSIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDESSQLLNLQRANSIIPSAGWPSKRAAIDPLSNGASQYFLPQVENLGTSQSSISQNTVALPPFPGRECSIDDRDSGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNNYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39392044 39399257 + Maker00035790 Lcy5g1695 633510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1695 907 Gene3D - 125 228 IPR015300 -
Lcy5g1695 907 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
Lcy5g1695 907 Gene3D - 291 363 - -
Lcy5g1695 907 FunFam Auxin response factor 291 363 - -
Lcy5g1695 907 Pfam AUX/IAA family 768 863 IPR033389 -
Lcy5g1695 907 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lcy5g1695 907 MobiDBLite consensus disorder prediction 579 598 - -
Lcy5g1695 907 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Lcy5g1695 907 Gene3D - 772 863 - -
Lcy5g1695 907 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Lcy5g1695 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 865 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy5g1695 907 ProSiteProfiles PB1 domain profile. 774 858 IPR053793 -
Lcy5g1695 907 MobiDBLite consensus disorder prediction 475 552 - -
Lcy5g1695 907 SUPERFAMILY CAD & PB1 domains 764 849 - -
Lcy5g1695 907 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Lcy5g1695 907 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy5g1695 907 FunFam Auxin response factor 125 229 - -
Lcy5g1695 907 FunFam Auxin response factor 770 863 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g1586 Lcy-Chr4:39949846 Lcy5g1695 Lcy-Chr5:39392044 4.60E-188 dispersed
Lcy4g2273 Lcy-Chr4:49213188 Lcy5g1695 Lcy-Chr5:39392044 3.08E-173 dispersed
Lcy5g1695 Lcy-Chr5:39392044 Lcy6g0783 Lcy-Chr6:7804027 1.56E-112 dispersed
Lcy10g1089 Lcy-Chr10:33094954 Lcy5g1695 Lcy-Chr5:39392044 2.90E-163 transposed
Lcy10g1091 Lcy-Chr10:33126181 Lcy5g1695 Lcy-Chr5:39392044 4.39E-73 transposed
Lcy9g2249 Lcy-Chr9:47000188 Lcy5g1695 Lcy-Chr5:39392044 8.36E-199 transposed
Lcy1g0151 Lcy-Chr1:1404121 Lcy5g1695 Lcy-Chr5:39392044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20124 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1695 K14486 - csv:101211705 1611.28