Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1703 ATGGACGGCGGCGCAGGGAGGTTGAAGGCGTCGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGGAAATACGAGTTGGGTAGAACCCTAGGCGAGGGAAACTTCGCGAAGGTCAAGTTTGCTCGGAACACGGAGACCGGCGATAACGTGGCTATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCACAAGATGATCGGTCAGATTAAACGTGAGATATCAACGATGAAATTAATCAGGCATCCAAACGTCATCCGTATGTTTGAGGTGATGGCTAGCAGGACCAAAATATACATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCGGTGGATTATTGTCACAGCAGAGGTGTTTTTCACAGAGACTTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGTGCTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGTGAAGATGGATTGCTCCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATAACAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCTTGTGGTGTAATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATGCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAATGCAAAGAAACTAATCAAAAGAATTTTGGACCCTAATCCCTCAACGAGAATTACCATTCAAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATTTGTCTTGATGATGTAGATGCTATCTTCGGTGAAACAGGGGATTCGGGTAGTCTTGTTGTGGAAAGGAAAGAGGAAGGACCTAATGCCCCTCTTACAATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCAAAAGAGATCCTTTCTAAAATTGAGGAAACTGCGACGCCTTTGGGTTTTGGTGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAGCCTCAAGACCGGGCTGAAAGACATCGTCTGGAAACATGAAGAGGATGGAGATGAAGATAGTGGTGCAGGTGTCTCGCAGTCAAAGTAA 1392 43.18 MDGGAGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETGDNVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMFEVMASRTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGALKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDANLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIQEVIENEWFRKGYKPPTFEQADICLDDVDAIFGETGDSGSLVVERKEEGPNAPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETATPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKSLKTGLKDIVWKHEEDGDEDSGAGVSQSK 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39519352 39527407 - Maker00035801 Lcy5g1703 633518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1703 463 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1703 463 CDD STKc_SnRK3 23 278 - -
Lcy5g1703 463 CDD CIPK_C 327 442 - -
Lcy5g1703 463 Gene3D Kinase associated domain 1, KA1 321 446 - -
Lcy5g1703 463 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Lcy5g1703 463 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Lcy5g1703 463 Gene3D Transferase(Phosphotransferase) domain 1 17 320 - -
Lcy5g1703 463 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Lcy5g1703 463 MobiDBLite consensus disorder prediction 1 23 - -
Lcy5g1703 463 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1703 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy5g1703 463 FunFam Non-specific serine/threonine protein kinase 17 320 - -
Lcy5g1703 463 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1703 463 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Lcy5g1703 463 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Lcy5g1703 463 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Lcy5g1703 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1672 Lcy-Chr11:40566075 Lcy5g1703 Lcy-Chr5:39519352 4.27E-12 dispersed
Lcy12g0913 Lcy-Chr12:13498007 Lcy5g1703 Lcy-Chr5:39519352 4.55E-115 dispersed
Lcy13g0576 Lcy-Chr13:7476289 Lcy5g1703 Lcy-Chr5:39519352 1.26E-81 dispersed
Lcy4g1024 Lcy-Chr4:18367462 Lcy5g1703 Lcy-Chr5:39519352 4.06E-47 dispersed
Lcy5g1703 Lcy-Chr5:39519352 Lcy8g1697 Lcy-Chr8:43542269 4.22E-168 dispersed
Lcy8g1059 Lcy-Chr8:36383744 Lcy5g1703 Lcy-Chr5:39519352 1.25E-25 dispersed
Lcy11g2086 Lcy-Chr11:44391794 Lcy5g1703 Lcy-Chr5:39519352 5.09E-217 transposed
Lcy12g0509 Lcy-Chr12:6116736 Lcy5g1703 Lcy-Chr5:39519352 1.40E-16 transposed
Lcy13g1456 Lcy-Chr13:33131246 Lcy5g1703 Lcy-Chr5:39519352 5.12E-117 transposed
Lcy2g0729 Lcy-Chr2:6426688 Lcy5g1703 Lcy-Chr5:39519352 2.05E-168 transposed
Lcy8g2184 Lcy-Chr8:47915589 Lcy5g1703 Lcy-Chr5:39519352 2.30E-61 transposed
Lcy1g0158 Lcy-Chr1:1470580 Lcy5g1703 Lcy-Chr5:39519352 8.90E-263 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65940 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1703 - - - 0.0