Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1744 ATGGCGGCCTCAACAATGGCTCTCTCCTCTCCGTCACTCGCCGGAAAGGCAGTGAAACTCACGCCCTCCTCCCCCGAGCTTCTCGGCAACGGCAGAGTCAGCATGAGGAAATCCGCCTCCAAGCCCGTTTCTTCTGGAAGCCCCTGGTACGGACCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCTCCCTCCTACCTCACCGGAGAGTTCCCCGGCGACTACGGCTGGGATACCGCCGGACTGTCCGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTGGAAGTCATCCACTCGAGGTGGGCCATGCTGGGAGCCCTTGGGTGCGTCTTCCCGGAGCTTCTGTCCCGCAACGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCCCAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAGAGCATTCTCGCCATCTGGGCCTCACAGGTGGTTCTGATGGGGGCCGTCGAGGGATACCGCATCGCCGGAGGCCCACTAGGCGAGATAACAGACCCGATTTACCCGGGTGGGAGCTTCGACCCGTTGGGGCTTGCAGATGACCCGGAAGCTTTTGCGGAGCTGAAGGTGAAGGAGCTGAAGAATGGGAGGTTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATCGTCACTGGAAAGGGCCCACTGGAGAATCTCGCTGACCACCTTGCTGACCCAGTCAACAATAATGCCTGGGCTTATGCCACCAACTTTGTTCCTGGAAAATGA 798 60.03 MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40062234 40063031 - Maker00035784 Lcy5g1744 633559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1744 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Lcy5g1744 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy5g1744 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lcy5g1744 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Lcy5g1744 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0203 Lcy-Chr1:1854990 Lcy5g1744 Lcy-Chr5:40062234 5.76E-191 dispersed
Lcy1g0204 Lcy-Chr1:1857306 Lcy5g1744 Lcy-Chr5:40062234 1.65E-190 dispersed
Lcy5g0115 Lcy-Chr5:1175515 Lcy5g1744 Lcy-Chr5:40062234 7.92E-29 dispersed
Lcy5g1744 Lcy-Chr5:40062234 Lcy5g1746 Lcy-Chr5:40088434 1.26E-194 dispersed
Lcy5g1744 Lcy-Chr5:40062234 Lcy5g1745 Lcy-Chr5:40082418 2.17E-192 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1744 K08912 - csv:101211276 526.168