Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1745 ATGGACTCCAGAGGCGAAACCGGCAAATGGGACGGGTCAAGACTGAAGGGGTCGGGCACTTTGTTCGACCCCCCTGCTCGGCCTCGGCCTTGGGCCGAGGCCGAGGCCCATGGTCGGCCTAGGCTCGCTTGCGCGGGCCGAGTCCCACCAACTCCGCTCGGTCCCTACAGCCTCCAGCCGCCCCGGTTCCGCCTGGGGACCCGAACTCTCTCTTCTCTACTCCATACTCTTGCTCTCCAGCCATTCCTTCCGTTTTCTGACTTAAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGCTCCGACAGTAAAACCATATTCTCGCTTGCAATGGCGGCCTCAACAATGGCTCTCTCCTCTCCGTCACTCGCCGGAAAGGCAGTGAAACTCACGCCCTCCTCCCCCGAGCTTCTCGGCAACGGCAGAGTCAGCATGAGGAAATCCGCCTCCAAGCCCGTTTCTTCTGGAAGCCCCTGGTACGGACCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCCAGCCTCCCTCCTACCTCACCGGAGAGTTCCCCGGCGACTACGGCTGGGATACCGCCGGACTGTCCGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTGGAAGTCATCCACTCGAGGTGGGCCATGCTGGGAGCCCTTGGGTGCGTCTTCCCGGAGCTTCTGTCCCGCAACGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCCCAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAGAGCATTCTCGCCATCTGGGCCTCACAGGTGGTTCTGATGGGGGCCGTCGAGGGATACCGCATCGCCGGAGGCCCACTAGGCGAGATAACAGACCCGATTTACCCGGGTGGGAGCTTCGACCCGTTGGGGCTTGCAGATGACCCGGAAGCTTTTGCGGAGCTGAAGGTGAAGGAGCTGAAGAATGGGAGGTTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATCGTCACTGGAAAGGGCCCACTGGAGAATCTCGCTGACCACCTTGCTGACCCAGTCAACAATAATGCCTGGGCTTATGCCACCAACTTTGTTCCTGGAAAATGA 1134 60.76 MDSRGETGKWDGSRLKGSGTLFDPPARPRPWAEAEAHGRPRLACAGRVPPTPLGPYSLQPPRFRLGTRTLSSLLHTLALQPFLPFSDLSIGGGVASTTPVCSSDSKTIFSLAMAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKPVSSGSPWYGPDRVKYLGPFSGQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40082418 40084588 - Maker00035857 Lcy5g1745 633560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1745 377 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 116 377 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy5g1745 377 MobiDBLite consensus disorder prediction 1 38 - -
Lcy5g1745 377 Pfam Chlorophyll A-B binding protein 177 344 IPR022796 -
Lcy5g1745 377 SUPERFAMILY Chlorophyll a-b binding protein 160 374 - -
Lcy5g1745 377 FunFam Chlorophyll a-b binding protein, chloroplastic 168 370 - -
Lcy5g1745 377 Gene3D Chlorophyll a/b binding protein domain 168 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0371 Lcy-Chr4:4641525 Lcy5g1745 Lcy-Chr5:40082418 1.76E-149 dispersed
Lcy5g1745 Lcy-Chr5:40082418 Lcy8g1625 Lcy-Chr8:42832368 1.18E-168 dispersed
Lcy5g1744 Lcy-Chr5:40062234 Lcy5g1745 Lcy-Chr5:40082418 2.17E-192 tandem
Lcy5g1745 Lcy-Chr5:40082418 Lcy5g1746 Lcy-Chr5:40088434 2.17E-192 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1745 K08912 - rcu:8289767 520.39