Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1767 ATGCCATGTTCTTCCTGTACGAAGCACTTCTTCAAGCGCTTTTTCACCGACGAGTTTCAAATGAATGGCGCTCTTCAAAGCACTTTCTTGTCTCCTGACCTCTTGCCTTCCCTTGGCGCCAGTATCAACCAGACCACCAAGCTTCGTAAACACATCATTTCCCCTTTCAACCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGTTCTAGTGATTTACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAGGCAAAATGCTCTTTTCATCATCGACCACGTCGTCAATGCCTTCTTCGCCGTCGATATCGTTTTAACTTTCTTCGTCGCATATCTCGATACCCAATCCTATCTTCTCGTCGACAACCCCAAAAAAATCGCAATCAGGCTGGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACACTGTGCTGGGTGCTTTAATTTCGTAATAGCAGATAAATATCCCGACCCAAAACGAACGTGGATTGGTGCAGTGAACCCAAATTTCAAAGAAGATAGTGTGTGGAATCTTTATGTGACTGCAATTTACTGGTCTATTACAACCTTAACCACCACTGGCTATGGCGATCTCCATGCTGAGAACCCTAGAGAAATGCTCTTTGATATCTTTTACATGCTCTTCAACTTGGGCTTGACTTCTTATCTCATTGGCAACATGACCAATCTCGTCGTCCATTGGACAAGTCGCACCCGAAACTTCAGAGATTCCGTACGAGCTGCAACGGAGTTTGCGTCGAGAAACCAGTTACCGGACCGGATACAAGACCAAATGTTGTCGCACATATGTCTGAAGTTCAGAACGGAGGGGCTGAAGCAACAAGATACCTTGAACGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCATTATCTCTTCTATCCTATTGTTGAGAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGATATTATACTCCAAAATGAGGCTCAAACAGATCTCTACATATTGGTCTCAGGCAGTGTGGATCTAATATCCAATATTGATGGCCATGATCAAGTTATTGGAAGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTGTTATGTCAAAAGCCACAACCTTTCACTGTTCAAACCACAAAGCTTTCTCAAATATTGAGGCTCAAGAGAACTTCTTTACTGTATATTATCCAATCAAATACAGAGGATGGGAATATTATTATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAAAATGGGCAATATTTGGAGAGATGGTGGGCTAAAGAAACTTGAAGATCATTCTAAAGATGAATATGTGGGAAGTTTAGATGAACATCGAATTGAGTTTGATGAGCTTGAAGTAGCTGAAAAGGATATTATTTTTTCTCATAACAAACAAGGAAATTTGCCAACGAGCTCTTGCTCGAACGTCTCGAGGCAAATCAAGAAGAGGGTTACCGTATATATGCAGCCTCGAGATCGAAGCAAGGTTAAAAGTCAATGCGGGAAGTTAATGCTTCTCCCTAGTTCGTTAGAAGAACTCTGCAAAATCGCAGGCGAAAAGTTTGGAGGAGAAATGCCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAGTGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATGATAATATCCAAAAATGTGGTCTAAAATGA 1797 41.24 MPCSSCTKHFFKRFFTDEFQMNGALQSTFLSPDLLPSLGASINQTTKLRKHIISPFNPRYRAWEMWLVVLVIYSAWICPFEFAFLPYRQNALFIIDHVVNAFFAVDIVLTFFVAYLDTQSYLLVDNPKKIAIRLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFVIADKYPDPKRTWIGAVNPNFKEDSVWNLYVTAIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPDRIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPIVEKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLISNIDGHDQVIGRATAGEMFGEFGVLCQKPQPFTVQTTKLSQILRLKRTSLLYIIQSNTEDGNIIMNNFFMKMKEYEKMGNIWRDGGLKKLEDHSKDEYVGSLDEHRIEFDELEVAEKDIIFSHNKQGNLPTSSCSNVSRQIKKRVTVYMQPRDRSKVKSQCGKLMLLPSSLEELCKIAGEKFGGEMPTKVMSADNAEIDDISVIRDGDHLFLLYNDNIQKCGLK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40356982 40363401 - Maker00035894 Lcy5g1767 633582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1767 598 ProSiteProfiles KHA domain profile. 518 598 IPR021789 -
Lcy5g1767 598 SUPERFAMILY cAMP-binding domain-like 253 442 IPR018490 -
Lcy5g1767 598 Gene3D Jelly Rolls 319 453 IPR014710 -
Lcy5g1767 598 SMART cnmp_10 326 443 IPR000595 -
Lcy5g1767 598 Gene3D Helix hairpin bin 250 316 - -
Lcy5g1767 598 Pfam Cyclic nucleotide-binding domain 345 431 IPR000595 -
Lcy5g1767 598 ProSiteProfiles cAMP/cGMP binding motif profile. 326 445 IPR000595 -
Lcy5g1767 598 Pfam KHA, dimerisation domain of potassium ion channel 517 586 IPR021789 -
Lcy5g1767 598 PANTHER POTASSIUM CHANNEL AKT1 133 453 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Lcy5g1767 598 FunFam Potassium channel KAT2 314 450 - -
Lcy5g1767 598 CDD CAP_ED 326 439 IPR000595 -
Lcy5g1767 598 Gene3D - 121 249 - -
Lcy5g1767 598 Pfam Ion transport protein 128 255 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g1767 598 Pfam Ion transport protein 60 122 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g1767 598 SUPERFAMILY Voltage-gated potassium channels 55 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0768 Lcy-Chr2:6828473 Lcy5g1767 Lcy-Chr5:40356982 4.32E-175 dispersed
Lcy5g1767 Lcy-Chr5:40356982 Lcy9g1802 Lcy-Chr9:43159089 1.20E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1767 K21867 - csv:101215858 984.171