Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1781 ATGGACAAGAATCGGAGCGGAGAAAGAGGGACGACGGCGTTTTCGTCCTCCGCGGATAGCAATATGAGGGCTCGTCCGAGCACCACCACTAGCACCGACAACAGAGCTGCGGCACTCGTGCAATACAATGCCGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGACGCCTCTGGTGAGTCTTTTAACTATTCGAGGTCCGTTCTTGAAGCTCCTCAATCTGTTCCCGAAGAACAAATTACTGCTTATCTGTCTAGGATTCAGAGGGGTGGGCTGGTCCAGCCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTTTTAAGATTATTAGCTACAGTGAGAATTGTTTTGAGTTGTTGGGGCTAAATGATCAGTTTGAGTTGGCACAGGGGAAGGGTCTGATTGGGGTTGACATGAGAGCTCTGTTTACGCCTTCCTCTGGCGCTTCTTTGGCAAAAGCGGCTTCGTCCAGGGAGATTTCGCTTCTGAATCCTGTTTGGGTTTATTCTAGGACTACTCAGAAGCCATTTTATGCCATATTACATAGAATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCACTGGCTGGTGCCGTGCAGTCGCAGAAACTTGCAGTTCGGGCGATTTCCAGGTTGCAGTCTCTACCTGGTGGTGATATTGGTGTTTTATGTGACACGGTTGTGGAAGATGTTCAGAAGCTGACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTAGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCGTCAGGATGATTTGTGATTGCCACGCGAAGCCCGTGCGGGTCGTTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACACTTCGATCACCACATAGCTGTCATTTACAGTACATGGCAAATATGGGTTCCTTAGCCTCATTAGCGATGGCAGTAATCATGAACAGTGATGACTCGCCAACAAGGTTATGGGGCCTGGTGGTGTGCCACCATACTTCTCCGCGCTATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTCCTCATGCAGGCATTTGGACTGCAGCTTTACATGGAGCTTCAATTGGCAGTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTCCGAGGCTCACCATATGCGTTGCTGACTCAGTCTCCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAACGGGGCATGTTGCTTACTAGGTGTAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAGTGGGTACTCAATAACCATGGGGATTCTACGGGACTAAGCACAGATAGTTTGGCTGACGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGTGGTGTGGCAGCTGCAAGAATTAGTTCAAAGGATTTCTTATTCTGGTTCAGGTCACATGCTGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTATGTCTTGGGAAGTTCATGAAATAAATGCCATTCATTCATTGCAGCTCATTATGAGGGAGTCTTTTTCAAACACTAGGGACAGTGATTCAAAGGCAGAAATTTCTGTCCAGCAGAGTCATTCTGAGGTCCAGGATATTGACGAACTCAGTTCAGTAGCTTGCGAAATGGTTAGGTTGATTGAAACAGCAACCGTTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAGATTTCTGAACTCGTAGGATTACCAACTAGTGAAGCTTTGGGGAGATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAGCTGTTGAGGATTTACTTTTCCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAGCTGACAAGTTTTGGAAGGGATAAAGAAAACTCTACCGTTTATATTGTAGCTAATGCTTGCACAAGTAGGGATTACACAAACAAAGTTGTCGGGGTTTGCTTTGTTGGGCAAGATGTTACATCTGAGAAAGGTGTGATGGATAAATTTATCCATCTACAAGGAGATTATAAGACTATTATTGAAAGTCTAAATCCATTGATTCCACCAATATTTGTTTCGGACGAGAATGGTTATTGCTGTGAATGGACTGCAGCCATGGAAAAAATTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTCTGTAGGTTGAAAGGTCTAGATACCCTTACGAGGTTTATGATTCTATTATATCAAGGTGTTGGTGGTGAAGAAACCGAGAAGTTTCCATTAGGATTTTTTGATAAGGATGGGAACTATGTGGAGGTACTTTTAACATCGAACAAGAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGCTTCCTGCAAATTGTTGAGCCCAACTTGCTAGGGGTCTCTGAAGAACATGGGCTGGGCGACAGAGAGGCTAATTTGCAGCTTAAGGAGTTGACTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATCAGATTTACTCATGAACTCCTCGTAAATTCTGGCATTACCGAAAACCAGAAACTCTTCCTCGATACAAGTGATGCGTGCGAGAGGCAAATCACGACAATCATGGAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCACGTAGAGATAAACAGAGAAGAGTTCCTCCTCGGGAGTGTTCTGGACGCCATCATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAGATGTTAACTCTTTGTGGCGATCAAATTAAGCTTCAACTGGTTTTGTCAGATTTCTTACTTAACGTAGTGCAGTATGCTCCTGTTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTCATCCAAGATATGGTCGGAGGAGGACAACAGTGGACTTCACAGCAAGGCCTCACCCTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAACATTCGCTATGTTAGAGAGCAAGCTAAATGCTACTTCCTCATCGATCTTGAACTCAAGTTAAAGCGCTCGAGGGGGTCAGTGGAAGCTACTACAAGCCAAAGGACTTGA 3393 43.97 MDKNRSGERGTTAFSSSADSNMRARPSTTTSTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSRIQRGGLVQPFGCLLAIEESSFKIISYSENCFELLGLNDQFELAQGKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVRVVQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSLASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLAVQLTEKKVLKTQTLLCDMLLRGSPYALLTQSPSIMDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGVAAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSRSMSWEVHEINAIHSLQLIMRESFSNTRDSDSKAEISVQQSHSEVQDIDELSSVACEMVRLIETATVPIFGVDSTGVINGWNAKISELVGLPTSEALGRSLVNEIVHEDSRGAVEDLLFHALQGKEDKNVELKLTSFGRDKENSTVYIVANACTSRDYTNKVVGVCFVGQDVTSEKGVMDKFIHLQGDYKTIIESLNPLIPPIFVSDENGYCCEWTAAMEKISGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGVGGEETEKFPLGFFDKDGNYVEVLLTSNKRTDAEGNVIGCICFLQIVEPNLLGVSEEHGLGDREANLQLKELTYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSDACERQITTIMEDMDFRSLEGGHVEINREEFLLGSVLDAIICQIMTVVREKNIQLFHEIPEEIKMLTLCGDQIKLQLVLSDFLLNVVQYAPVLDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSQQGLTLNLSRRLLNKLNGNIRYVREQAKCYFLIDLELKLKRSRGSVEATTSQRT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40495604 40501754 + Maker00036383 Lcy5g1781 633596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1781 1130 FunFam Phytochrome 610 742 - -
Lcy5g1781 1130 Pfam PAS fold 748 867 IPR013767 GO:0006355(InterPro)
Lcy5g1781 1130 Pfam PAS fold 617 732 IPR013767 GO:0006355(InterPro)
Lcy5g1781 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Lcy5g1781 1130 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 Gene3D - 930 1106 IPR036890 -
Lcy5g1781 1130 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lcy5g1781 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Lcy5g1781 1130 Gene3D - 404 577 IPR043150 -
Lcy5g1781 1130 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Lcy5g1781 1130 CDD HisKA 894 949 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy5g1781 1130 Gene3D PAS domain 86 331 - -
Lcy5g1781 1130 SMART pas_2 616 683 IPR000014 -
Lcy5g1781 1130 SMART pas_2 747 817 IPR000014 -
Lcy5g1781 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Lcy5g1781 1130 Gene3D PAS domain 761 872 - -
Lcy5g1781 1130 SMART HisKA_10 889 953 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy5g1781 1130 FunFam Phytochrome 404 533 - -
Lcy5g1781 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1111 IPR036890 -
Lcy5g1781 1130 SMART HKATPase_4 1001 1113 IPR003594 -
Lcy5g1781 1130 MobiDBLite consensus disorder prediction 1 35 - -
Lcy5g1781 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1109 IPR003594 -
Lcy5g1781 1130 SMART gaf_1 228 409 IPR003018 GO:0005515(InterPro)
Lcy5g1781 1130 NCBIfam PAS domain S-box protein 761 866 IPR000014 -
Lcy5g1781 1130 NCBIfam PAS domain S-box protein 621 736 IPR000014 -
Lcy5g1781 1130 SUPERFAMILY GAF domain-like 407 584 - -
Lcy5g1781 1130 Gene3D PAS domain 615 736 - -
Lcy5g1781 1130 MobiDBLite consensus disorder prediction 8 35 - -
Lcy5g1781 1130 Pfam Phytochrome region 412 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Lcy5g1781 1130 Pfam His Kinase A (phospho-acceptor) domain 892 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy5g1781 1130 Gene3D - 209 560 IPR029016 -
Lcy5g1781 1130 PANTHER OS08G0260000 PROTEIN 22 993 - -
Lcy5g1781 1130 Pfam PAS fold 82 195 IPR013654 GO:0006355(InterPro)
Lcy5g1781 1130 CDD PAS 625 732 IPR000014 -
Lcy5g1781 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Lcy5g1781 1130 CDD HATPase_Phy-like 1001 1113 IPR044767 -
Lcy5g1781 1130 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Lcy5g1781 1130 FunFam Phytochrome 761 869 - -
Lcy5g1781 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Lcy5g1781 1130 PIRSF Phytochrome_conventional 15 1122 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lcy5g1781 1130 CDD PAS 759 867 IPR000014 -
Lcy5g1781 1130 Pfam GAF domain 229 396 IPR003018 GO:0005515(InterPro)
Lcy5g1781 1130 SUPERFAMILY GAF domain-like 208 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1781 K12123 - - csv:101214900 2001.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1336 Lcy-Chr11:37022952 Lcy5g1781 Lcy-Chr5:40495604 0 dispersed
Lcy4g0391 Lcy-Chr4:4806130 Lcy5g1781 Lcy-Chr5:40495604 0 dispersed
Lcy5g1781 Lcy-Chr5:40495604 Lcy3g1773 Lcy-Chr3:45006886 9.57E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g2314 . 5 1163 Histidine Kinase Gene Family AT2G17820 62.7 0.0e+00 1379.0
Lcy7g1375 . 28 1013 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1349.3
Lcy10g1594 . 23 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1336.6
Lcy3g1254 . 125 1094 Histidine Kinase Gene Family AT2G01830 52.0 1.1e-272 937.2
Lcy8g1364 . 304 1260 Histidine Kinase Gene Family AT2G01830 51.0 6.2e-257 884.8
Lcy4g0365 . 18 831 Histidine Kinase Gene Family AT2G01830 53.9 3.0e-235 812.8
Lcy9g1919 . 92 1121 Histidine Kinase Gene Family AT5G10720 57.2 9.5e-294 1006.9
Lcy13g2291 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.6 0.0e+00 1841.6
Lcy13g2288 . 1 1129 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lcy4g0391 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1227.6
Lcy11g1336 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1203.7
Lcy11g1336 . 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1675.6
Lcy5g1781 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.3 0.0e+00 1261.9
Lcy13g2291 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1094.0
Lcy4g0391 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 1.1e-312 1070.1
Lcy13g2288 . 7 1064 Histidine Kinase Gene Family AT2G18790 51.4 8.0e-311 1063.9
Lcy4g0391 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1387.9
Lcy11g1336 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1162.1
Lcy13g2291 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1120.9
Lcy11g1336 . 3 1122 Histidine Kinase Gene Family AT4G16250 76.2 0.0e+00 1721.1
Lcy5g1781 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.2 0.0e+00 1300.4
Lcy13g2291 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1139.8
Lcy4g0391 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1113.2
Lcy13g2288 . 8 1125 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1087.0
Lcy5g1781 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1401.7
Lcy11g1336 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.5 0.0e+00 1274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34