Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1781 ATGGACAAGAATCGGAGCGGAGAAAGAGGGACGACGGCGTTTTCGTCCTCCGCGGATAGCAATATGAGGGCTCGTCCGAGCACCACCACTAGCACCGACAACAGAGCTGCGGCACTCGTGCAATACAATGCCGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGACGCCTCTGGTGAGTCTTTTAACTATTCGAGGTCCGTTCTTGAAGCTCCTCAATCTGTTCCCGAAGAACAAATTACTGCTTATCTGTCTAGGATTCAGAGGGGTGGGCTGGTCCAGCCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTTTTAAGATTATTAGCTACAGTGAGAATTGTTTTGAGTTGTTGGGGCTAAATGATCAGTTTGAGTTGGCACAGGGGAAGGGTCTGATTGGGGTTGACATGAGAGCTCTGTTTACGCCTTCCTCTGGCGCTTCTTTGGCAAAAGCGGCTTCGTCCAGGGAGATTTCGCTTCTGAATCCTGTTTGGGTTTATTCTAGGACTACTCAGAAGCCATTTTATGCCATATTACATAGAATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCACTGGCTGGTGCCGTGCAGTCGCAGAAACTTGCAGTTCGGGCGATTTCCAGGTTGCAGTCTCTACCTGGTGGTGATATTGGTGTTTTATGTGACACGGTTGTGGAAGATGTTCAGAAGCTGACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTAGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCGTCAGGATGATTTGTGATTGCCACGCGAAGCCCGTGCGGGTCGTTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACACTTCGATCACCACATAGCTGTCATTTACAGTACATGGCAAATATGGGTTCCTTAGCCTCATTAGCGATGGCAGTAATCATGAACAGTGATGACTCGCCAACAAGGTTATGGGGCCTGGTGGTGTGCCACCATACTTCTCCGCGCTATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTCCTCATGCAGGCATTTGGACTGCAGCTTTACATGGAGCTTCAATTGGCAGTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTCCGAGGCTCACCATATGCGTTGCTGACTCAGTCTCCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAACGGGGCATGTTGCTTACTAGGTGTAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAGTGGGTACTCAATAACCATGGGGATTCTACGGGACTAAGCACAGATAGTTTGGCTGACGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGTGGTGTGGCAGCTGCAAGAATTAGTTCAAAGGATTTCTTATTCTGGTTCAGGTCACATGCTGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTATGTCTTGGGAAGTTCATGAAATAAATGCCATTCATTCATTGCAGCTCATTATGAGGGAGTCTTTTTCAAACACTAGGGACAGTGATTCAAAGGCAGAAATTTCTGTCCAGCAGAGTCATTCTGAGGTCCAGGATATTGACGAACTCAGTTCAGTAGCTTGCGAAATGGTTAGGTTGATTGAAACAGCAACCGTTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAGATTTCTGAACTCGTAGGATTACCAACTAGTGAAGCTTTGGGGAGATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAGCTGTTGAGGATTTACTTTTCCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAGCTGACAAGTTTTGGAAGGGATAAAGAAAACTCTACCGTTTATATTGTAGCTAATGCTTGCACAAGTAGGGATTACACAAACAAAGTTGTCGGGGTTTGCTTTGTTGGGCAAGATGTTACATCTGAGAAAGGTGTGATGGATAAATTTATCCATCTACAAGGAGATTATAAGACTATTATTGAAAGTCTAAATCCATTGATTCCACCAATATTTGTTTCGGACGAGAATGGTTATTGCTGTGAATGGACTGCAGCCATGGAAAAAATTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTCTGTAGGTTGAAAGGTCTAGATACCCTTACGAGGTTTATGATTCTATTATATCAAGGTGTTGGTGGTGAAGAAACCGAGAAGTTTCCATTAGGATTTTTTGATAAGGATGGGAACTATGTGGAGGTACTTTTAACATCGAACAAGAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGCTTCCTGCAAATTGTTGAGCCCAACTTGCTAGGGGTCTCTGAAGAACATGGGCTGGGCGACAGAGAGGCTAATTTGCAGCTTAAGGAGTTGACTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATCAGATTTACTCATGAACTCCTCGTAAATTCTGGCATTACCGAAAACCAGAAACTCTTCCTCGATACAAGTGATGCGTGCGAGAGGCAAATCACGACAATCATGGAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCACGTAGAGATAAACAGAGAAGAGTTCCTCCTCGGGAGTGTTCTGGACGCCATCATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAGATGTTAACTCTTTGTGGCGATCAAATTAAGCTTCAACTGGTTTTGTCAGATTTCTTACTTAACGTAGTGCAGTATGCTCCTGTTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTCATCCAAGATATGGTCGGAGGAGGACAACAGTGGACTTCACAGCAAGGCCTCACCCTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAACATTCGCTATGTTAGAGAGCAAGCTAAATGCTACTTCCTCATCGATCTTGAACTCAAGTTAAAGCGCTCGAGGGGGTCAGTGGAAGCTACTACAAGCCAAAGGACTTGA 3393 43.97 MDKNRSGERGTTAFSSSADSNMRARPSTTTSTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSRIQRGGLVQPFGCLLAIEESSFKIISYSENCFELLGLNDQFELAQGKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVRVVQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSLASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLAVQLTEKKVLKTQTLLCDMLLRGSPYALLTQSPSIMDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGVAAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSRSMSWEVHEINAIHSLQLIMRESFSNTRDSDSKAEISVQQSHSEVQDIDELSSVACEMVRLIETATVPIFGVDSTGVINGWNAKISELVGLPTSEALGRSLVNEIVHEDSRGAVEDLLFHALQGKEDKNVELKLTSFGRDKENSTVYIVANACTSRDYTNKVVGVCFVGQDVTSEKGVMDKFIHLQGDYKTIIESLNPLIPPIFVSDENGYCCEWTAAMEKISGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGVGGEETEKFPLGFFDKDGNYVEVLLTSNKRTDAEGNVIGCICFLQIVEPNLLGVSEEHGLGDREANLQLKELTYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSDACERQITTIMEDMDFRSLEGGHVEINREEFLLGSVLDAIICQIMTVVREKNIQLFHEIPEEIKMLTLCGDQIKLQLVLSDFLLNVVQYAPVLDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSQQGLTLNLSRRLLNKLNGNIRYVREQAKCYFLIDLELKLKRSRGSVEATTSQRT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40495604 40501754 + Maker00036383 Lcy5g1781 633596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1781 1130 FunFam Phytochrome 610 742 - -
Lcy5g1781 1130 Pfam PAS fold 748 867 IPR013767 GO:0006355(InterPro)
Lcy5g1781 1130 Pfam PAS fold 617 732 IPR013767 GO:0006355(InterPro)
Lcy5g1781 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Lcy5g1781 1130 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 Gene3D - 930 1106 IPR036890 -
Lcy5g1781 1130 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lcy5g1781 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Lcy5g1781 1130 Gene3D - 404 577 IPR043150 -
Lcy5g1781 1130 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Lcy5g1781 1130 CDD HisKA 894 949 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy5g1781 1130 Gene3D PAS domain 86 331 - -
Lcy5g1781 1130 SMART pas_2 616 683 IPR000014 -
Lcy5g1781 1130 SMART pas_2 747 817 IPR000014 -
Lcy5g1781 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Lcy5g1781 1130 Gene3D PAS domain 761 872 - -
Lcy5g1781 1130 SMART HisKA_10 889 953 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy5g1781 1130 FunFam Phytochrome 404 533 - -
Lcy5g1781 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1111 IPR036890 -
Lcy5g1781 1130 SMART HKATPase_4 1001 1113 IPR003594 -
Lcy5g1781 1130 MobiDBLite consensus disorder prediction 1 35 - -
Lcy5g1781 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1109 IPR003594 -
Lcy5g1781 1130 SMART gaf_1 228 409 IPR003018 GO:0005515(InterPro)
Lcy5g1781 1130 NCBIfam PAS domain S-box protein 761 866 IPR000014 -
Lcy5g1781 1130 NCBIfam PAS domain S-box protein 621 736 IPR000014 -
Lcy5g1781 1130 SUPERFAMILY GAF domain-like 407 584 - -
Lcy5g1781 1130 Gene3D PAS domain 615 736 - -
Lcy5g1781 1130 MobiDBLite consensus disorder prediction 8 35 - -
Lcy5g1781 1130 Pfam Phytochrome region 412 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lcy5g1781 1130 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Lcy5g1781 1130 Pfam His Kinase A (phospho-acceptor) domain 892 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lcy5g1781 1130 Gene3D - 209 560 IPR029016 -
Lcy5g1781 1130 PANTHER OS08G0260000 PROTEIN 22 993 - -
Lcy5g1781 1130 Pfam PAS fold 82 195 IPR013654 GO:0006355(InterPro)
Lcy5g1781 1130 CDD PAS 625 732 IPR000014 -
Lcy5g1781 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Lcy5g1781 1130 CDD HATPase_Phy-like 1001 1113 IPR044767 -
Lcy5g1781 1130 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Lcy5g1781 1130 FunFam Phytochrome 761 869 - -
Lcy5g1781 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Lcy5g1781 1130 PIRSF Phytochrome_conventional 15 1122 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lcy5g1781 1130 CDD PAS 759 867 IPR000014 -
Lcy5g1781 1130 Pfam GAF domain 229 396 IPR003018 GO:0005515(InterPro)
Lcy5g1781 1130 SUPERFAMILY GAF domain-like 208 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1336 Lcy-Chr11:37022952 Lcy5g1781 Lcy-Chr5:40495604 0 dispersed
Lcy4g0391 Lcy-Chr4:4806130 Lcy5g1781 Lcy-Chr5:40495604 0 dispersed
Lcy5g1781 Lcy-Chr5:40495604 Lcy3g1773 Lcy-Chr3:45006886 9.57E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1781 K12123 - csv:101214900 2001.87