Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1788 ATGGTAGTCGAAGAGACGATCAAAGCTACATCGACGGAAGATCTTTCCAATTCCATCGCAAATCAAAACCCTAGGGGACGAGGCGGTGAGGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGCGACGACGACCTCGACTCGTCCAATTTATCGGCGGCGATAGTGCACCAGCCTCACCCTCTGGAGCACTCTTGGACCTTCTGGTTCGATAACCCCTCTGCCAAATCCAAACAGGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCATTGAGGGCAGATTTGTACTGCTTTAAACATAAAATTGAGCCTAAATGGGAGGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGAAAGTCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGACTGTGGTGATGAAATTTGTGGAGCGGTTGTTAATGTTAGATCTGGGCAGGATAAGATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGAAAACAGTGGAAAGAGTTTCTCGATTACAACGACAGCATTGGCTTTATATTCCACGACGATGCAAAGATATTCGACAGACATGCGAAGAACCGATATTCGGTATGA 708 46.61 MVVEETIKATSTEDLSNSIANQNPRGRGGEEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHDDAKIFDRHAKNRYSV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40598968 40602463 + Maker00036283 Lcy5g1788 633603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1788 235 MobiDBLite consensus disorder prediction 1 37 - -
Lcy5g1788 235 SUPERFAMILY eIF4e-like 56 231 IPR023398 -
Lcy5g1788 235 Gene3D RNA Cap, Translation Initiation Factor Eif4e 51 235 IPR023398 -
Lcy5g1788 235 ProSitePatterns Eukaryotic initiation factor 4E signature. 116 139 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Lcy5g1788 235 MobiDBLite consensus disorder prediction 9 24 - -
Lcy5g1788 235 Pfam Eukaryotic initiation factor 4E 61 213 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy5g1788 235 FunFam Eukaryotic translation initiation factor 4E 51 235 - -
Lcy5g1788 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 27 225 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0805 Lcy-Chr11:24131581 Lcy5g1788 Lcy-Chr5:40598968 5.56E-31 dispersed
Lcy13g0404 Lcy-Chr13:4699677 Lcy5g1788 Lcy-Chr5:40598968 1.24E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1788 K03259 - csv:101206312 447.203