Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1788 | ATGGTAGTCGAAGAGACGATCAAAGCTACATCGACGGAAGATCTTTCCAATTCCATCGCAAATCAAAACCCTAGGGGACGAGGCGGTGAGGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGCGACGACGACCTCGACTCGTCCAATTTATCGGCGGCGATAGTGCACCAGCCTCACCCTCTGGAGCACTCTTGGACCTTCTGGTTCGATAACCCCTCTGCCAAATCCAAACAGGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCATTGAGGGCAGATTTGTACTGCTTTAAACATAAAATTGAGCCTAAATGGGAGGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGAAAGTCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGACTGTGGTGATGAAATTTGTGGAGCGGTTGTTAATGTTAGATCTGGGCAGGATAAGATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGAAAACAGTGGAAAGAGTTTCTCGATTACAACGACAGCATTGGCTTTATATTCCACGACGATGCAAAGATATTCGACAGACATGCGAAGAACCGATATTCGGTATGA | 708 | 46.61 | MVVEETIKATSTEDLSNSIANQNPRGRGGEEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHDDAKIFDRHAKNRYSV | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40598968 | 40602463 | + | Maker00036283 | Lcy5g1788 | 633603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1788 | 235 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Lcy5g1788 | 235 | SUPERFAMILY | eIF4e-like | 56 | 231 | IPR023398 | - | |
Lcy5g1788 | 235 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 51 | 235 | IPR023398 | - | |
Lcy5g1788 | 235 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 116 | 139 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Lcy5g1788 | 235 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Lcy5g1788 | 235 | Pfam | Eukaryotic initiation factor 4E | 61 | 213 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy5g1788 | 235 | FunFam | Eukaryotic translation initiation factor 4E | 51 | 235 | - | - | |
Lcy5g1788 | 235 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 27 | 225 | IPR001040 | GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0805 | Lcy-Chr11:24131581 | Lcy5g1788 | Lcy-Chr5:40598968 | 5.56E-31 | dispersed | |
Lcy13g0404 | Lcy-Chr13:4699677 | Lcy5g1788 | Lcy-Chr5:40598968 | 1.24E-75 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g1788 | K03259 | - | csv:101206312 | 447.203 |