Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1792 | ATGCTGTCAAACAGCCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTGCTCTCAATGAAGATGCTTACAGTCTGGGAGAATTCAACAGTTACGATCTCTTCACTTTCTCTGGTGATAGTTGTGGGTTATTTAACGAGGATGAGGTCTTAGACGGGGTATCAGTGGTAAAAGACATCATTGAAGGATTCCAAAGGTCAGAAGAGAGGAGTTCTAAGCAACGCCTTCTAGTTGTAGCAAACAGGTTGCCTGTGTCTGCTATTAGGAAAGGGAAGGAAACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGTCGGACAGAGAGCCCTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCAGTGTTTCTTGACGAGGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTGTTTCATTATCTTGGTCTTCCACAAGAAGATCGCCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAATTGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTACCAAAATGTCTTAAAGAGCATAATAGTAAGATGAAAGTTGGTTGGTTCCTTCATACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTAATGAGCACAAATTATTTGTATTATGCGGATTTCCATCTTATTATCATTCTCTTCCATCACATATTGTGCTTTTCTATTGTGAGTTTGGTTTATTTCAAGCTCTGGGCTTAGATGACATGTATTTCTCCTCCAGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCTTGCACCCGTATTCTTGGATTGGAGGGAACACCTGAAGGAGTAGAGGATCAAGGAAAACTAACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTTCAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTCTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGTATTAATGGGAGATTTGGCACTCTTACTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCATGCATTATGTGCTTTATATGCTGTCACTGATGTGGCTCTAGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTCGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTGTTTTAGTGAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCAAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCATGTTACAACTCACACTTCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATAAGGACCAGACAGATACCACCTTTACTTCCCATTGGAGAGGCAGTGAACTGTTATTTGCGATCACATAATCGATTGGTTATTCTGGGTTTCAATGTTACCTTAACTGAACCTGTTGATGCCCTTGGAAGAAGATGTGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAAATATGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACGACAGTGGTTGTCCTTAGTGGGAGTGATAGAAGTGTTCTAGATGATAATTTCGGCGACTACAACATGTGGTTGGCAGCGGAAAACGGGATGTTCTTACGTCCTACAAAGGGAGAATGGATGACGACCATGCCTGAAAATTTAAATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTTGAGTATTTTACCGAAAGAACTCCTAGATCCCACTTTGAGCTTCGTGAAACTTCACTGGTGTGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTTCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACGAAGGATGAAGATGTCTATACATTTTTCGAGCCCGACCTTCCTTCTGAAGTGCCACATACAGCAAGAGCAACAGTCACCAATCCTTTCGGAGTACCAGTGCCAAAGACCCCAAGCAATGGAGTCCCACCCAAGTCAGCACGCCTCAAGAAACAGCGTTCCCTTTCCATTTTAGAAAGAAGAGCAAGCAGCCATGGCAGTGCAGTCTTCTGGAGGCCTATAGTACAGGATCGACTGTCGCTGCACGAGGGATCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCCGTGGGGCGGAAGCGATCAAATGCGAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAGTTGACAGAATGTTCAAGTACGAGTTAA | 2916 | 42.42 | MLSNSHNNSPPTPRTRLERLLRERELRRSNRSALNEDAYSLGEFNSYDLFTFSGDSCGLFNEDEVLDGVSVVKDIIEGFQRSEERSSKQRLLVVANRLPVSAIRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEVGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQLFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGNEHKLFVLCGFPSYYHSLPSHIVLFYCEFGLFQALGLDDMYFSSSFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMQADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIGEAVNCYLRSHNRLVILGFNVTLTEPVDALGRRCGQIRDMDLKVHPNMREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLNMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPHTARATVTNPFGVPVPKTPSNGVPPKSARLKKQRSLSILERRASSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVTLVKELTECSSTS | 971 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40640939 | 40651580 | - | Maker00036423 | Lcy5g1792 | 633607 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1792 | 971 | Gene3D | Glycogen Phosphorylase B; | 382 | 584 | - | - | |
Lcy5g1792 | 971 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 382 | 584 | - | - | |
Lcy5g1792 | 971 | Gene3D | - | 659 | 848 | IPR023214 | - | |
Lcy5g1792 | 971 | SUPERFAMILY | HAD-like | 659 | 963 | IPR036412 | - | |
Lcy5g1792 | 971 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 725 | 805 | - | - | |
Lcy5g1792 | 971 | Pfam | Trehalose-phosphatase | 658 | 859 | IPR003337 | GO:0005992(InterPro) | |
Lcy5g1792 | 971 | Gene3D | Glycogen Phosphorylase B; | 77 | 291 | - | - | |
Lcy5g1792 | 971 | Pfam | Glycosyltransferase family 20 | 90 | 289 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lcy5g1792 | 971 | Pfam | Glycosyltransferase family 20 | 332 | 600 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lcy5g1792 | 971 | Gene3D | Glycogen Phosphorylase B; | 330 | 381 | - | - | |
Lcy5g1792 | 971 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 659 | 728 | - | - | |
Lcy5g1792 | 971 | Gene3D | - | 725 | 805 | - | - | |
Lcy5g1792 | 971 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 89 | 291 | - | - | |
Lcy5g1792 | 971 | CDD | GT20_TPS | 90 | 600 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lcy5g1792 | 971 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 82 | 296 | - | - | |
Lcy5g1792 | 971 | CDD | HAD_TPP | 633 | 866 | - | - | |
Lcy5g1792 | 971 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 332 | 603 | - | - | |
Lcy5g1792 | 971 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 82 | 966 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g1792 | Lcy-Chr5:40640939 | Lcy6g2240 | Lcy-Chr6:46976806 | 2.03E-128 | dispersed | |
Lcy9g1400 | Lcy-Chr9:39029629 | Lcy5g1792 | Lcy-Chr5:40640939 | 6.17E-206 | transposed | |
Lcy4g0684 | Lcy-Chr4:8257974 | Lcy5g1792 | Lcy-Chr5:40640939 | 1.66E-129 | wgd | |
Lcy5g1792 | Lcy-Chr5:40640939 | Lcy9g1399 | Lcy-Chr9:39008513 | 1.07E-252 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g1792 | K16055 | - | csv:101213690 | 1677.53 |