Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1792 ATGCTGTCAAACAGCCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTGCTCTCAATGAAGATGCTTACAGTCTGGGAGAATTCAACAGTTACGATCTCTTCACTTTCTCTGGTGATAGTTGTGGGTTATTTAACGAGGATGAGGTCTTAGACGGGGTATCAGTGGTAAAAGACATCATTGAAGGATTCCAAAGGTCAGAAGAGAGGAGTTCTAAGCAACGCCTTCTAGTTGTAGCAAACAGGTTGCCTGTGTCTGCTATTAGGAAAGGGAAGGAAACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGTCGGACAGAGAGCCCTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCAGTGTTTCTTGACGAGGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTGTTTCATTATCTTGGTCTTCCACAAGAAGATCGCCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAATTGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTACCAAAATGTCTTAAAGAGCATAATAGTAAGATGAAAGTTGGTTGGTTCCTTCATACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTAATGAGCACAAATTATTTGTATTATGCGGATTTCCATCTTATTATCATTCTCTTCCATCACATATTGTGCTTTTCTATTGTGAGTTTGGTTTATTTCAAGCTCTGGGCTTAGATGACATGTATTTCTCCTCCAGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCTTGCACCCGTATTCTTGGATTGGAGGGAACACCTGAAGGAGTAGAGGATCAAGGAAAACTAACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTTCAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTCTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGTATTAATGGGAGATTTGGCACTCTTACTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCATGCATTATGTGCTTTATATGCTGTCACTGATGTGGCTCTAGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTCGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTGTTTTAGTGAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCAAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCATGTTACAACTCACACTTCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATAAGGACCAGACAGATACCACCTTTACTTCCCATTGGAGAGGCAGTGAACTGTTATTTGCGATCACATAATCGATTGGTTATTCTGGGTTTCAATGTTACCTTAACTGAACCTGTTGATGCCCTTGGAAGAAGATGTGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAAATATGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACGACAGTGGTTGTCCTTAGTGGGAGTGATAGAAGTGTTCTAGATGATAATTTCGGCGACTACAACATGTGGTTGGCAGCGGAAAACGGGATGTTCTTACGTCCTACAAAGGGAGAATGGATGACGACCATGCCTGAAAATTTAAATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTTGAGTATTTTACCGAAAGAACTCCTAGATCCCACTTTGAGCTTCGTGAAACTTCACTGGTGTGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTTCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACGAAGGATGAAGATGTCTATACATTTTTCGAGCCCGACCTTCCTTCTGAAGTGCCACATACAGCAAGAGCAACAGTCACCAATCCTTTCGGAGTACCAGTGCCAAAGACCCCAAGCAATGGAGTCCCACCCAAGTCAGCACGCCTCAAGAAACAGCGTTCCCTTTCCATTTTAGAAAGAAGAGCAAGCAGCCATGGCAGTGCAGTCTTCTGGAGGCCTATAGTACAGGATCGACTGTCGCTGCACGAGGGATCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCCGTGGGGCGGAAGCGATCAAATGCGAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAGTTGACAGAATGTTCAAGTACGAGTTAA 2916 42.42 MLSNSHNNSPPTPRTRLERLLRERELRRSNRSALNEDAYSLGEFNSYDLFTFSGDSCGLFNEDEVLDGVSVVKDIIEGFQRSEERSSKQRLLVVANRLPVSAIRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEVGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQLFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGNEHKLFVLCGFPSYYHSLPSHIVLFYCEFGLFQALGLDDMYFSSSFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMQADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIGEAVNCYLRSHNRLVILGFNVTLTEPVDALGRRCGQIRDMDLKVHPNMREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLNMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPHTARATVTNPFGVPVPKTPSNGVPPKSARLKKQRSLSILERRASSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVTLVKELTECSSTS 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40640939 40651580 - Maker00036423 Lcy5g1792 633607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1792 971 Gene3D Glycogen Phosphorylase B; 382 584 - -
Lcy5g1792 971 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 382 584 - -
Lcy5g1792 971 Gene3D - 659 848 IPR023214 -
Lcy5g1792 971 SUPERFAMILY HAD-like 659 963 IPR036412 -
Lcy5g1792 971 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 725 805 - -
Lcy5g1792 971 Pfam Trehalose-phosphatase 658 859 IPR003337 GO:0005992(InterPro)
Lcy5g1792 971 Gene3D Glycogen Phosphorylase B; 77 291 - -
Lcy5g1792 971 Pfam Glycosyltransferase family 20 90 289 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy5g1792 971 Pfam Glycosyltransferase family 20 332 600 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy5g1792 971 Gene3D Glycogen Phosphorylase B; 330 381 - -
Lcy5g1792 971 FunFam Alpha,alpha-trehalose-phosphate synthase 659 728 - -
Lcy5g1792 971 Gene3D - 725 805 - -
Lcy5g1792 971 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 291 - -
Lcy5g1792 971 CDD GT20_TPS 90 600 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy5g1792 971 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 82 296 - -
Lcy5g1792 971 CDD HAD_TPP 633 866 - -
Lcy5g1792 971 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 332 603 - -
Lcy5g1792 971 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 966 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1792 Lcy-Chr5:40640939 Lcy6g2240 Lcy-Chr6:46976806 2.03E-128 dispersed
Lcy9g1400 Lcy-Chr9:39029629 Lcy5g1792 Lcy-Chr5:40640939 6.17E-206 transposed
Lcy4g0684 Lcy-Chr4:8257974 Lcy5g1792 Lcy-Chr5:40640939 1.66E-129 wgd
Lcy5g1792 Lcy-Chr5:40640939 Lcy9g1399 Lcy-Chr9:39008513 1.07E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1792 K16055 - csv:101213690 1677.53