Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1795 | ATGGGTTACCCAGATCAGAATGAAGCCTCTCAGAGAAGAACAGGTAGAGGGAAGATCGAAATCAAGAGGATCGAAAACACGACGAATCGTCAAGTTACTTTCTGTAAAAGGAGAAATGGATTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAATATGCCAACAACAGTGTTAGGGCTACGATTTCAAGGTACAAAAAGGCATGTTCCGATCCCTCCAGCGCCGGATCCGTTTCTGAAGCCAATACTCAGTTCTACCAGCAAGAATCGGCCAAGCTGCGAGCTCAAATCGGCAATTTGCAAACCCTAAACAGTTCGTTGTCGGTGAAGGATCTGAAAAGTCTGGAGGTGAAACTGGAGAAAGGAATTGCCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAATGGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACGGAGAGAAGCCAACAAAATACAAATGCAATAGCAGCAGCAGCAACAACAGAAGGATCGGGAGCCCCAAATTTTGAGGGGCAGCAATACGACCCAACAAACTACTTTGAACAACAACCAAGTCACTTCCCTCGCCACAATGACCATATATCTCTCCAACTCGTGTAA | 702 | 45.58 | MGYPDQNEASQRRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANTQFYQQESAKLRAQIGNLQTLNSSLSVKDLKSLEVKLEKGIARIRSRKNELLFAEIEYMQKREMELHNNNQLIRAKIAETERSQQNTNAIAAAATTEGSGAPNFEGQQYDPTNYFEQQPSHFPRHNDHISLQLV | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40680779 | 40687681 | - | Maker00036564 | Lcy5g1795 | 633610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1795 | 233 | SMART | madsneu2 | 14 | 73 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | SUPERFAMILY | SRF-like | 15 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | Gene3D | - | 26 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | CDD | MADS_MEF2_like | 15 | 88 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lcy5g1795 | 233 | ProSiteProfiles | MADS-box domain profile. | 14 | 74 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 15 | 201 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lcy5g1795 | 233 | PRINTS | MADS domain signature | 16 | 36 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | PRINTS | MADS domain signature | 51 | 72 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | PRINTS | MADS domain signature | 36 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | ProSitePatterns | MADS-box domain signature. | 16 | 70 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lcy5g1795 | 233 | Pfam | K-box region | 97 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lcy5g1795 | 233 | ProSiteProfiles | K-box domain profile. | 100 | 182 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lcy5g1795 | 233 | FunFam | agamous-like MADS-box protein AGL11 | 26 | 109 | - | - | |
Lcy5g1795 | 233 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 23 | 70 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g1795 | Lcy-Chr5:40680779 | Lcy8g1617 | Lcy-Chr8:42750420 | 1.18E-53 | dispersed | |
Lcy1g0239 | Lcy-Chr1:2165279 | Lcy5g1795 | Lcy-Chr5:40680779 | 1.44E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20130 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g1795 | K09264 | - | csv:101205366 | 322.013 |