Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1795 ATGGGTTACCCAGATCAGAATGAAGCCTCTCAGAGAAGAACAGGTAGAGGGAAGATCGAAATCAAGAGGATCGAAAACACGACGAATCGTCAAGTTACTTTCTGTAAAAGGAGAAATGGATTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAATATGCCAACAACAGTGTTAGGGCTACGATTTCAAGGTACAAAAAGGCATGTTCCGATCCCTCCAGCGCCGGATCCGTTTCTGAAGCCAATACTCAGTTCTACCAGCAAGAATCGGCCAAGCTGCGAGCTCAAATCGGCAATTTGCAAACCCTAAACAGTTCGTTGTCGGTGAAGGATCTGAAAAGTCTGGAGGTGAAACTGGAGAAAGGAATTGCCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAATGGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGACGGAGAGAAGCCAACAAAATACAAATGCAATAGCAGCAGCAGCAACAACAGAAGGATCGGGAGCCCCAAATTTTGAGGGGCAGCAATACGACCCAACAAACTACTTTGAACAACAACCAAGTCACTTCCCTCGCCACAATGACCATATATCTCTCCAACTCGTGTAA 702 45.58 MGYPDQNEASQRRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANTQFYQQESAKLRAQIGNLQTLNSSLSVKDLKSLEVKLEKGIARIRSRKNELLFAEIEYMQKREMELHNNNQLIRAKIAETERSQQNTNAIAAAATTEGSGAPNFEGQQYDPTNYFEQQPSHFPRHNDHISLQLV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40680779 40687681 - Maker00036564 Lcy5g1795 633610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1795 233 SMART madsneu2 14 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 SUPERFAMILY SRF-like 15 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 Gene3D - 26 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 CDD MADS_MEF2_like 15 88 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy5g1795 233 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy5g1795 233 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 ProSitePatterns MADS-box domain signature. 16 70 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy5g1795 233 Pfam K-box region 97 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy5g1795 233 ProSiteProfiles K-box domain profile. 100 182 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy5g1795 233 FunFam agamous-like MADS-box protein AGL11 26 109 - -
Lcy5g1795 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1795 Lcy-Chr5:40680779 Lcy8g1617 Lcy-Chr8:42750420 1.18E-53 dispersed
Lcy1g0239 Lcy-Chr1:2165279 Lcy5g1795 Lcy-Chr5:40680779 1.44E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20130 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1795 K09264 - csv:101205366 322.013