Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1798 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGCTGTGGATTGCTTCATGTTCTTGAGTTTTGTAGACTCCAAGCTTCCCCAAGAAGAGGTTCGTTCAGACTGCAGAAAACTGTTTCCAATGGAATATTTAGTTGATGCACTACAGCAAATTACAAGAACATTAGGTGCGGTTTATTGGAAATTCAATAGTAACACCTGTGACGTTGAAATGTTTGGGATCACAGAAAAACCTCCAAGGGGATCTGAGGGTAGAATTGGTTGTGATTGCAACCTCGAGAACAGCACAATATGTCATGTCGTAAAGATGTATAATCCTCTTATCTTATCTCTTAATATTGATTCCGAGCTTAATATAGAGTTCAAAAATCACAATCTTCCCGGTGTTCTTCCACCTGAAATAGTCAAGCTTCCTTACCTGCAAGAAGTTGATTTAGCTTACAACTACCTTCATGGTAATATACCTCGGGTGTGGGCTTCAATGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCAGGGGAAATACCATCAGAATTGGGCAATATGACCACTCTACAGAACCTGACCCTTGAAGCAAACCAATTTACTGGTGCAATTCCACCACAACTTGGGAGGTTAAGCAACCTGCAAACCTTGATGCTATCATCTAACCAATTGACTGGCACATTGCCGACAACTTTTGCTGCATTGGATAACCTAACAAATTTCCGAATAAATGATAACAACCTCAATGGAACCATACCCGACTTCATACAGAAGTGGAAACTACTCGAAAGATTGAGGATCAGTGATATTAATGGGCCAAAGCAGGATTTTCCTGAGTTGATAACCATGACGGGCATGGTTAAATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGACGAGACCAAATATGGAAATGCTGGACCTCAGCTTTAACCAGTTGACTGGGGAAGTTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATCTTGAGGGATGGAACTACTGTAGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGTTTATTCAAAATGTTGGTTCATCAATTCTGGTGGGAATGACTTAACCTTGGAGGTAAACAACAGAAACATTCGCTACAATGGGGATGCAGATGTTGAAGGTGGGGCGGCAAAATTCTATATTGATCCTGATAGCTACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATACACGTTACACTTTATCCCTGCCTTCAACAAATTTGTCCGAGCTATATTCAACAGCGCGTCGTAGTCCAATTTCACTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGAAGCTTCATTTTGCGGAGTTACAATTTACAGATGATCAGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCCACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAGGGCGGGAGGAGCTCGAAAACCAACAGAAATGCAGTTTGCTAACGTTAGTGTAATTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACTAGGATTCCTGATAGAGGAAATTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAACATTGTTCAAACCGTGAAAGTGGTAAAAAGAAAACTGTAGCTATAGTTGTTGGAGTTACAGTTGGATTATTTTGCTTTGCTACAATCATCATAGTGGGGCTTCTTTGGTGGAAACGCACCCTTAGAGCAATCAGGCAGAGTAAAGGTGGTACAGATCTTTCAGGAATAGAGGTGCAAACTGGAATTTTTACCCTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTCTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGCCAATTGGCTGATGGTACTATTGTAGCAATTAAGCAGCTCTCGTCCAAATCAAAGCAGGGAAATCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGTTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATACCTGGAAAACAATAGTCTTGCCCGAGCGCTATTCGGTCCAGATTACTGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGCTTAGCATATCTCCACGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTACTAGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGATGATGAAGAGAAGACTCACATCACTACCAGAGTGGCTGGGACCATAGGATATATGGCTCCAGAATATGCACTTTGGGGTTATCTGACTTACAAAGCAGATGTGTATAGTTTTGGAGTCGTGGCCTTGGAAATTATCAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGTCTTCTAGACTGGGCCTGTCAATTGCAACAATCTGGGAACCTCATGGAGATGGTTGATGAGAAGTTGAGGTCAGAAATCGACACGAAAGAAGCAGAAAACATGGTAAAAATAGCCCTTCTCTGCACCAATGCTTCGCCATCGGTAAGGCCTGCAATGTCTGAAGTGGTGAACATGCTCGAAGGACGAATGGCAATTCCAGACCTGATCCCGGAACTGAGTACTTACGCTGAAGATCTGAGGTTCAAGGCGATGAGAGATATGCGTAGACAGCAACAGAGCCAAAGCCTGTCTGAAAGCCAGACACAAAATTCCACAATGCAAACATTTGGATCTTCCTCTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCATCAACCTGA 2973 41.27 MMVAKSFFVFIVLAVDCFMFLSFVDSKLPQEEVRSDCRKLFPMEYLVDALQQITRTLGAVYWKFNSNTCDVEMFGITEKPPRGSEGRIGCDCNLENSTICHVVKMYNPLILSLNIDSELNIEFKNHNLPGVLPPEIVKLPYLQEVDLAYNYLHGNIPRVWASMRLTSISLLVNRLSGEIPSELGNMTTLQNLTLEANQFTGAIPPQLGRLSNLQTLMLSSNQLTGTLPTTFAALDNLTNFRINDNNLNGTIPDFIQKWKLLERLRISDINGPKQDFPELITMTGMVKLVLRNCNIAGKIPSYVWTRPNMEMLDLSFNQLTGEVPEDINMERIRFLFLSGNMLSGNLPESILRDGTTVDLSYNNLTWQGPEQHVYSKCWFINSGGNDLTLEVNNRNIRYNGDADVEGGAAKFYIDPDSYWGLSSTGDFMDDFDYQNTRYTLSLPSTNLSELYSTARRSPISLTYFHHCLDNGNYSVKLHFAELQFTDDQTYTSLGRRKFDIHIQDRLVLENFDIEERAGGARKPTEMQFANVSVINHVLEIRFYWAGKGTTRIPDRGNYGPLISAISVYSDLKHCSNRESGKKKTVAIVVGVTVGLFCFATIIIVGLLWWKRTLRAIRQSKGGTDLSGIEVQTGIFTLKQIKAATNHFDSSNKIGEGGFGPVYKGQLADGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYCRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACQLQQSGNLMEMVDEKLRSEIDTKEAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMAIPDLIPELSTYAEDLRFKAMRDMRRQQQSQSLSESQTQNSTMQTFGSSSTSGNEFYDINPEPRSSST 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40718351 40729542 - Maker00036305 Lcy5g1798 633613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1798 990 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 944 IPR051824 -
Lcy5g1798 990 ProSiteProfiles Protein kinase domain profile. 647 924 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1798 990 Gene3D Phosphorylase Kinase; domain 1 611 722 - -
Lcy5g1798 990 Pfam Leucine Rich Repeat 308 327 IPR001611 GO:0005515(InterPro)
Lcy5g1798 990 Pfam Malectin domain 377 565 IPR021720 -
Lcy5g1798 990 Gene3D Transferase(Phosphotransferase) domain 1 723 925 - -
Lcy5g1798 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1798 990 Gene3D Ribonuclease Inhibitor 87 230 IPR032675 -
Lcy5g1798 990 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 48 227 - -
Lcy5g1798 990 SUPERFAMILY L domain-like 120 365 - -
Lcy5g1798 990 CDD STKc_IRAK 653 920 - -
Lcy5g1798 990 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 616 722 - -
Lcy5g1798 990 Gene3D - 376 571 - -
Lcy5g1798 990 Pfam Protein tyrosine and serine/threonine kinase 650 918 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1798 990 SMART serkin_6 647 918 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1798 990 MobiDBLite consensus disorder prediction 947 990 - -
Lcy5g1798 990 Gene3D Ribonuclease Inhibitor 231 374 IPR032675 -
Lcy5g1798 990 FunFam Putative LRR receptor-like serine/threonine-protein kinase 723 929 - -
Lcy5g1798 990 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515(InterPro)
Lcy5g1798 990 MobiDBLite consensus disorder prediction 945 990 - -
Lcy5g1798 990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 375 570 - -
Lcy5g1798 990 SUPERFAMILY Protein kinase-like (PK-like) 629 920 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1798 Lcy-Chr5:40718351 Lcy9g1380 Lcy-Chr9:38709991 1.03E-223 dispersed
Lcy8g1492 Lcy-Chr8:41570728 Lcy5g1798 Lcy-Chr5:40718351 2.94E-75 dispersed
Lcy9g1547 Lcy-Chr9:40584577 Lcy5g1798 Lcy-Chr5:40718351 2.84E-68 dispersed
Lcy5g1798 Lcy-Chr5:40718351 Lcy9g1396 Lcy-Chr9:38975458 6.12E-224 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65941 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1798 - - - 0.0