Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1802 ATGACATCGGGGACGAGAATGCCGACTTGGAAGGAGAGGGAGAATAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCTAAGATCTTTCTCGGCTTGCGAATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAATAATGAGGTCCTCAAAGCCCTCTGCGATGAAGCTGGATGGACTGTCGAGGAAGACGGCACTACCTACCGGAAGCCCACTATGAGATTCGTTCTGGTTCAGTCCTGGGTGGAAGACGACGAGGAATTCTCTGAGTTTTTCAGACGCCAACACAGAGGTGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTTCTGCGAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGTCCCACCTCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAAAACCTCTCCTCAGGTTCATCATCAGCTTCCTCCAGGCTGCCACACCATAATCTTTACATCACTGGTGGCTCCATAAGTGCGCCCGTCACCCCTCCATCGAGCTCCCCAACAGCTCGAACACCCAGAAAACCAAATGATTGGGACAGTCATCCAGCAGCTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGCTTGCCTGCATCAACCCCACCGAGCCCTGGGCGTCAGGTGTTGGCTGATTCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCGTTTGGATTTAAGGAGGCAATGTCCGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGTGGGACGTGCTCGCCCACGGTCGCTGCAGGCACTGATCATACTTCAGATGTTCCGATGATGGATGGAACTGTGGCAGAGTTTGCCTTTGGTAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCGTCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGAACGAGGTGA 1071 53.22 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKPTMRFVLVQSWVEDDEEFSEFFRRQHRGGCKPVERDIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPTSSRYAIKGNDNAADPNSLIPWLKNLSSGSSSASSRLPHHNLYITGGSISAPVTPPSSSPTARTPRKPNDWDSHPAAAPAWAAQRFSCLPASTPPSPGRQVLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGSRNWTPAQSGTCSPTVAAGTDHTSDVPMMDGTVAEFAFGSCSIGLVKPWEGERIHEECVSDDLELTLGNSRTR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40762427 40765596 - Maker00036571 Lcy5g1802 633617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1802 356 MobiDBLite consensus disorder prediction 131 150 - -
Lcy5g1802 356 MobiDBLite consensus disorder prediction 188 218 - -
Lcy5g1802 356 MobiDBLite consensus disorder prediction 1 20 - -
Lcy5g1802 356 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 169 IPR008540 -
Lcy5g1802 356 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 99 356 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy5g1802 356 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0738 Lcy-Chr1:6323803 Lcy5g1802 Lcy-Chr5:40762427 2.19E-58 dispersed
Lcy5g1802 Lcy-Chr5:40762427 Lcy6g0647 Lcy-Chr6:6145967 6.81E-144 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20131 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1802 - - - 0.0