Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1804 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAGACCCTTGCGGTAGTTGCGACGGAGCTCGTTTCTCGATTTTCAGAGAAGTCCTTCTTCTTTCAGCGAAGGAATTCGCGATCTCTGATAAGGAAGCTTGAGGTTTGTCTCGTGTTTTTGGACTTTCTGAAGGATACGGATGCGACTTTGCCTCACACGGCGTTGCTCTGTTTGAAAGAGCTTTATCTGTTGTTGTATCGGTCTAAGATACTTCTCGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCCGGGCATTTCAACGATTTGAATTTGGAGTTGTTGACATTTTTGGATGTTTTTCCTCTTGAGGAAGTTGAATTGGGGATGGATGTTAGAGAGCAGGTTGAGCTCTTGCAGAAGCAGTTGAGAAGGTCGAGGATGTTTGTTAACGAACGTGATGAAGCGTTGAGGGCTTGCTTCCTTTCGTTTCTCGATGAGTTTGAGAACGGTCGGCTTCCAAATCCGAGGGAAATGAGAGAGTTTTTTGTGGATAAGTTGGGGATTCGGAATGCGAAGAGTTGTAGAACTGAAATTGAGTTTTTGGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCCACCGTCGCGGTGTTAAACGGTTTCGTTGCTTTCACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGAATCAAGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTACTCAGGAGATCGCCGATACGTTTTTAACGATCCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGACCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCAATTACCAGATGGATGGAAGAAGGGCACAACACTTGCCCGAAGACAGGGCAAATGCTCATCCATACCCGTCTCGCTCCCAACCGGGCATTGAGGAATTTGATCATGCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCGGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTTTAATCCTTATTCAACAGTTATCAATTGGATCGCAAGATGCGCAGACGATTGCTGCACGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATCATGAGTGAAGTAGGGTGTTTAGGATCCATAACCGAAGTGTTGAGATTCGGACATACTACAGAAGCTCGGGAAAACGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTTCAAGAAGAGAATAGCAGAGGAGGGTGGTGCTGTTGAAGCTTTGGCAGGGTTGTTGAGAGATGGTACCACAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAATTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCACTCGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGGGCCGAAGCAGTCGGTAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGGACACCAAGAGGAAAAGAGAACGCAGTAGCTGCTTTGCTCGAGTTGTGTCGGAGTGGTGGAGCTGCTACGACTGAGCAAGTGTTCAAGGCTCCTGCTTTGGCTGGGTTGCTCCAATCGCTCCTATTTACCGGTACGAAGCGGGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTTTTCCAAAGATGTGAGCATGTCACAATGCATTATGGTGGATTGGGCGTTGGTTACGCCTACGCAAGTAACTCGGCTTCTAACAGAGATTCAAGCTTTACTAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCCGTCGTATAG 2148 47.63 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAVVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDFLKDTDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGMDVREQVELLQKQLRRSRMFVNERDEALRACFLSFLDEFENGRLPNPREMREFFVDKLGIRNAKSCRTEIEFLEEQIVNHEGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDEVESRAANQKKLKKNLITQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATALILIQQLSIGSQDAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDFKKRIAEEGGAVEALAGLLRDGTTRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVGKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQSLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRDSSFTSEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40796872 40799019 - Maker00036871 Lcy5g1804 633619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1804 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Lcy5g1804 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1804 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Lcy5g1804 715 Gene3D - 518 674 IPR011989 -
Lcy5g1804 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Lcy5g1804 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 Gene3D - 393 517 IPR011989 -
Lcy5g1804 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Lcy5g1804 715 Coils Coil 212 232 - -
Lcy5g1804 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1804 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Lcy5g1804 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Lcy5g1804 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1804 715 SUPERFAMILY RING/U-box 277 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2184 Lcy-Chr10:45765657 Lcy5g1804 Lcy-Chr5:40796872 5.64E-89 dispersed
Lcy12g2016 Lcy-Chr12:41553434 Lcy5g1804 Lcy-Chr5:40796872 9.36E-46 dispersed
Lcy13g1697 Lcy-Chr13:35947310 Lcy5g1804 Lcy-Chr5:40796872 1.77E-41 dispersed
Lcy1g0403 Lcy-Chr1:3588172 Lcy5g1804 Lcy-Chr5:40796872 1.10E-40 dispersed
Lcy1g1614 Lcy-Chr1:16399422 Lcy5g1804 Lcy-Chr5:40796872 1.01E-135 dispersed
Lcy4g1406 Lcy-Chr4:34663840 Lcy5g1804 Lcy-Chr5:40796872 6.31E-52 dispersed
Lcy5g1148 Lcy-Chr5:24682916 Lcy5g1804 Lcy-Chr5:40796872 6.06E-36 dispersed
Lcy5g1804 Lcy-Chr5:40796872 Lcy8g1815 Lcy-Chr8:44541024 1.58E-54 dispersed
Lcy5g1804 Lcy-Chr5:40796872 Lcy5g2232 Lcy-Chr5:45328806 9.32E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1804 - - - 0.0