Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1804 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAGACCCTTGCGGTAGTTGCGACGGAGCTCGTTTCTCGATTTTCAGAGAAGTCCTTCTTCTTTCAGCGAAGGAATTCGCGATCTCTGATAAGGAAGCTTGAGGTTTGTCTCGTGTTTTTGGACTTTCTGAAGGATACGGATGCGACTTTGCCTCACACGGCGTTGCTCTGTTTGAAAGAGCTTTATCTGTTGTTGTATCGGTCTAAGATACTTCTCGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCCGGGCATTTCAACGATTTGAATTTGGAGTTGTTGACATTTTTGGATGTTTTTCCTCTTGAGGAAGTTGAATTGGGGATGGATGTTAGAGAGCAGGTTGAGCTCTTGCAGAAGCAGTTGAGAAGGTCGAGGATGTTTGTTAACGAACGTGATGAAGCGTTGAGGGCTTGCTTCCTTTCGTTTCTCGATGAGTTTGAGAACGGTCGGCTTCCAAATCCGAGGGAAATGAGAGAGTTTTTTGTGGATAAGTTGGGGATTCGGAATGCGAAGAGTTGTAGAACTGAAATTGAGTTTTTGGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCCACCGTCGCGGTGTTAAACGGTTTCGTTGCTTTCACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGAATCAAGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTACTCAGGAGATCGCCGATACGTTTTTAACGATCCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGACCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCAATTACCAGATGGATGGAAGAAGGGCACAACACTTGCCCGAAGACAGGGCAAATGCTCATCCATACCCGTCTCGCTCCCAACCGGGCATTGAGGAATTTGATCATGCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCGGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTTTAATCCTTATTCAACAGTTATCAATTGGATCGCAAGATGCGCAGACGATTGCTGCACGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATCATGAGTGAAGTAGGGTGTTTAGGATCCATAACCGAAGTGTTGAGATTCGGACATACTACAGAAGCTCGGGAAAACGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTTCAAGAAGAGAATAGCAGAGGAGGGTGGTGCTGTTGAAGCTTTGGCAGGGTTGTTGAGAGATGGTACCACAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAATTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCACTCGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGGGCCGAAGCAGTCGGTAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGGACACCAAGAGGAAAAGAGAACGCAGTAGCTGCTTTGCTCGAGTTGTGTCGGAGTGGTGGAGCTGCTACGACTGAGCAAGTGTTCAAGGCTCCTGCTTTGGCTGGGTTGCTCCAATCGCTCCTATTTACCGGTACGAAGCGGGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTTTTCCAAAGATGTGAGCATGTCACAATGCATTATGGTGGATTGGGCGTTGGTTACGCCTACGCAAGTAACTCGGCTTCTAACAGAGATTCAAGCTTTACTAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCCGTCGTATAG 2148 47.63 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAVVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDFLKDTDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGMDVREQVELLQKQLRRSRMFVNERDEALRACFLSFLDEFENGRLPNPREMREFFVDKLGIRNAKSCRTEIEFLEEQIVNHEGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDEVESRAANQKKLKKNLITQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATALILIQQLSIGSQDAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDFKKRIAEEGGAVEALAGLLRDGTTRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVGKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQSLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRDSSFTSEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40796872 40799019 - Maker00036871 Lcy5g1804 633619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1804 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Lcy5g1804 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1804 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Lcy5g1804 715 Gene3D - 518 674 IPR011989 -
Lcy5g1804 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Lcy5g1804 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Lcy5g1804 715 Gene3D - 393 517 IPR011989 -
Lcy5g1804 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Lcy5g1804 715 Coils Coil 212 232 - -
Lcy5g1804 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1804 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Lcy5g1804 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Lcy5g1804 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy5g1804 715 SUPERFAMILY RING/U-box 277 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1804 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2184 Lcy-Chr10:45765657 Lcy5g1804 Lcy-Chr5:40796872 5.64E-89 dispersed
Lcy12g2016 Lcy-Chr12:41553434 Lcy5g1804 Lcy-Chr5:40796872 9.36E-46 dispersed
Lcy13g1697 Lcy-Chr13:35947310 Lcy5g1804 Lcy-Chr5:40796872 1.77E-41 dispersed
Lcy1g0403 Lcy-Chr1:3588172 Lcy5g1804 Lcy-Chr5:40796872 1.10E-40 dispersed
Lcy1g1614 Lcy-Chr1:16399422 Lcy5g1804 Lcy-Chr5:40796872 1.01E-135 dispersed
Lcy4g1406 Lcy-Chr4:34663840 Lcy5g1804 Lcy-Chr5:40796872 6.31E-52 dispersed
Lcy5g1148 Lcy-Chr5:24682916 Lcy5g1804 Lcy-Chr5:40796872 6.06E-36 dispersed
Lcy5g1804 Lcy-Chr5:40796872 Lcy8g1815 Lcy-Chr8:44541024 1.58E-54 dispersed
Lcy5g1804 Lcy-Chr5:40796872 Lcy5g2232 Lcy-Chr5:45328806 9.32E-89 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008312 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35