Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g1811 | ATGGAAAGGGTTGGTGCACAATCGTCCGTTAGTAGTTCAAAGACGTACTCTGCCCAACCAAATCTTTGCTTCCACTTCCCGCAAAAATTCATTTCTGTTCTGTTTCTACACAGAGCTGTCCGTAACACAGACTTTGCTTCTCATCTCTTCTTCCTCACTCTGCAGATGGGGGCTGCGAGGCTAATTTTTGATTTGGGGTTGGAGAATCTCGGGAATCCAACCAGAATGATGGTTTCTGACGTCCCGATTTGCCACACTTGTGGTGAGCCAGTCGGAGTTGATGCCAATGGAGAAGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTACTGATGGATGCTGATACGAAGACATCAGGAGGTCGAAACACAATGGCATCTCATCTCAGCCATTCTCAGGACGTCGGAGTTCATGCTAGACATGTTAGTAGCGTGTCGACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTACTGTGAAGACTGAACAAGAAGCTGAAATTCCACCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCGTTTTCTACAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGCACTTTTCTTTCAATATCGGATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGGGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCAGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAGTCTCTAGTTGAAACAGCTGATTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCGTTGGTAGCAAAGGCTCAAAAAACACCGGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCAGCAGTCCTCACAAATGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTACGTACAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAATATGAAGGGATTGGATGGCATTCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCGCTTTATGGCTACGGACCTCCTTCTATGCCTAGCTTATCTAAGTCATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCCAAAGATCCGACAGAGATTCAGAGAGATGCAAAGAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGACGAGTATGAGAGGTCAATGCTGATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCGTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCGGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTAGTTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTAGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTTGCAGGCGGCCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTACTGACAGGAAAATTTATCATACCAACGCTCTCAAATCTAGCAAGTACCCTTTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTATCCTTGAGCTGCGTTGGAGTGGAGTTAGCATCGAAGACATATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACGCAGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTCGGCAAGGTATTCTTTGCCTTTTGGGTGATCTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGTACTCCAACCATTGTTGTTCTTTGGTCAGTGCTGTTGGCATCAGTTTTCTCACTTGTCTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCATTGCACAAAGCTGCATTGCCATAGATTGTTGA | 3177 | 44.22 | MERVGAQSSVSSSKTYSAQPNLCFHFPQKFISVLFLHRAVRNTDFASHLFFLTLQMGAARLIFDLGLENLGNPTRMMVSDVPICHTCGEPVGVDANGEVFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKTSGGRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAEIPPQQQMEEKQISEEAAVTHSFSTVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSILELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTIAQSCIAIDC | 1058 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40912544 | 40919042 | + | Maker00036449 | Lcy5g1811 | 633626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g1811 | 1058 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 154 | IPR013083 | - | |
Lcy5g1811 | 1058 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 344 | 851 | IPR029044 | - | |
Lcy5g1811 | 1058 | Pfam | Zinc-binding RING-finger | 82 | 134 | IPR027934 | - | |
Lcy5g1811 | 1058 | ProSiteProfiles | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 626 | 656 | IPR017896 | - | |
Lcy5g1811 | 1058 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 250 | 1025 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Lcy5g1811 | 1058 | FunFam | Cellulose synthase | 447 | 621 | - | - | |
Lcy5g1811 | 1058 | SUPERFAMILY | RING/U-box | 72 | 135 | - | - | |
Lcy5g1811 | 1058 | MobiDBLite | consensus disorder prediction | 198 | 222 | - | - | |
Lcy5g1811 | 1058 | Pfam | Cellulose synthase | 330 | 1049 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Lcy5g1811 | 1058 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 482 | 624 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g1811 | Lcy-Chr5:40912544 | Lcy9g1827 | Lcy-Chr9:43369630 | 0 | dispersed | |
Lcy5g1811 | Lcy-Chr5:40912544 | Lcy1g1957 | Lcy-Chr1:23473829 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g1811 | K10999 | - | csv:101208988 | 1932.92 |