Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1811 ATGGAAAGGGTTGGTGCACAATCGTCCGTTAGTAGTTCAAAGACGTACTCTGCCCAACCAAATCTTTGCTTCCACTTCCCGCAAAAATTCATTTCTGTTCTGTTTCTACACAGAGCTGTCCGTAACACAGACTTTGCTTCTCATCTCTTCTTCCTCACTCTGCAGATGGGGGCTGCGAGGCTAATTTTTGATTTGGGGTTGGAGAATCTCGGGAATCCAACCAGAATGATGGTTTCTGACGTCCCGATTTGCCACACTTGTGGTGAGCCAGTCGGAGTTGATGCCAATGGAGAAGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTACTGATGGATGCTGATACGAAGACATCAGGAGGTCGAAACACAATGGCATCTCATCTCAGCCATTCTCAGGACGTCGGAGTTCATGCTAGACATGTTAGTAGCGTGTCGACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTACTGTGAAGACTGAACAAGAAGCTGAAATTCCACCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCGTTTTCTACAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGCACTTTTCTTTCAATATCGGATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGGGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCAGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAGTCTCTAGTTGAAACAGCTGATTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCGTTGGTAGCAAAGGCTCAAAAAACACCGGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCAGCAGTCCTCACAAATGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTACGTACAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAATATGAAGGGATTGGATGGCATTCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCGCTTTATGGCTACGGACCTCCTTCTATGCCTAGCTTATCTAAGTCATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCCAAAGATCCGACAGAGATTCAGAGAGATGCAAAGAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGACGAGTATGAGAGGTCAATGCTGATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCGTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCGGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTAGTTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTAGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTTGCAGGCGGCCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTACTGACAGGAAAATTTATCATACCAACGCTCTCAAATCTAGCAAGTACCCTTTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTATCCTTGAGCTGCGTTGGAGTGGAGTTAGCATCGAAGACATATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACGCAGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTCGGCAAGGTATTCTTTGCCTTTTGGGTGATCTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGTACTCCAACCATTGTTGTTCTTTGGTCAGTGCTGTTGGCATCAGTTTTCTCACTTGTCTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCATTGCACAAAGCTGCATTGCCATAGATTGTTGA 3177 44.22 MERVGAQSSVSSSKTYSAQPNLCFHFPQKFISVLFLHRAVRNTDFASHLFFLTLQMGAARLIFDLGLENLGNPTRMMVSDVPICHTCGEPVGVDANGEVFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKTSGGRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAEIPPQQQMEEKQISEEAAVTHSFSTVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSILELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTIAQSCIAIDC 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40912544 40919042 + Maker00036449 Lcy5g1811 633626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1811 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Lcy5g1811 1058 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 851 IPR029044 -
Lcy5g1811 1058 Pfam Zinc-binding RING-finger 82 134 IPR027934 -
Lcy5g1811 1058 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 626 656 IPR017896 -
Lcy5g1811 1058 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 250 1025 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy5g1811 1058 FunFam Cellulose synthase 447 621 - -
Lcy5g1811 1058 SUPERFAMILY RING/U-box 72 135 - -
Lcy5g1811 1058 MobiDBLite consensus disorder prediction 198 222 - -
Lcy5g1811 1058 Pfam Cellulose synthase 330 1049 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy5g1811 1058 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 482 624 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1811 Lcy-Chr5:40912544 Lcy9g1827 Lcy-Chr9:43369630 0 dispersed
Lcy5g1811 Lcy-Chr5:40912544 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1811 K10999 - csv:101208988 1932.92