Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g1821 ATGGAGAAAAAGGGTGTCATTTTAATGCATAGATACGAGCTTGGGAGGTTGCTTGGCCAGGGAACTTTTGCCAAAGTCTACCATGCTCGGAATCTCAAGTCAGGCCAGAGCGTGGCCATCAAGGTCATTGACAAAGAGAAAGTGCTGCGAGTTGGCCTGATCGATCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTGCGCCATCCCAATGTGGTGCAGCTCTATGAGGTGATGGCTAGCAGGACCAAGATCTATTTCGCCATGGAGTATGTCAAAGGTGGCGAGCTTTTCAACAAGGTGGCTAAAGGGAGGCTCAAGGAAGATGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGTGCTGTTGATTACTGCCATAGCCGTGGCGTCTACCACAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCCGAGTCTAGAAGGCAAGATGGGCTTCTTCATACCACTTGTGGAACCCCTGCTTATGTCGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGAGCTAAAGCAGATATCTGGTCTTCTGGGGTTGTCCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCACGACCCAAATCTAATGGAAATGTACAGAAAAATCTCTAGAGGAGAATTCAAATGCCCTCATTGGTTTCCCCCAGAAGTTCGCAAGCTCCTCTCAAGAATCCTCGATCCATGTCCCCACACCAGAATAAACATGGCCAAACTCATGGAAAATTACTGGTTCAAAAAGGGGTTCAAGGCAAATTTAGCACAAAAACCGCTTCAAATCAATGGCAACATCTCGTCTGCGAGAGACGTCCACGACGCTTTCGACGACGTCAGTTCCGAGGTAAGCTCCGCCAGTGACAGCAGCATTGAGAGTGGAAGGCCACCGGTCAGACAGCATTCCTTCAATGCATTTGACATCATATCCCTCTCACCAGGTTTCAACCTGTCGGGTCTGTTTGAGAGTGAACCGAATCAGAGTTCGTCGTCGCGTTTCACGACGACGAAACCGCCATCGGCGATCGTGTCGAAGTTCGAGGAAATAGCAGAGAATGAGAGGTTTGAGGTAATGGAGAAAGATGGGATAGTGAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGGCAGTTGGCTATAGATGCTGAGATATTTGAAGTGACACCTTCTCTTTTTGTGGTGGAGGTGAAGAAAACTGCTGGGGACACTTTGGAATACAGGCAGTTTTACAACAAAGACATGAGGCCTTGCCTTAAGGACATTGTGTGGACTTGGGAAGGAAGTGAACAGCAGCAGTCACAACAACAACCACAACCACAGACTGTTTAG 1383 47.79 MEKKGVILMHRYELGRLLGQGTFAKVYHARNLKSGQSVAIKVIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFNKVAKGRLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPHWFPPEVRKLLSRILDPCPHTRINMAKLMENYWFKKGFKANLAQKPLQINGNISSARDVHDAFDDVSSEVSSASDSSIESGRPPVRQHSFNAFDIISLSPGFNLSGLFESEPNQSSSSRFTTTKPPSAIVSKFEEIAENERFEVMEKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSLFVVEVKKTAGDTLEYRQFYNKDMRPCLKDIVWTWEGSEQQQSQQQPQPQTV 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40981273 40983552 - Maker00036656 Lcy5g1821 633636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g1821 460 FunFam Non-specific serine/threonine protein kinase 317 441 - -
Lcy5g1821 460 Pfam NAF domain 321 377 IPR004041 GO:0007165(InterPro)
Lcy5g1821 460 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165(InterPro)
Lcy5g1821 460 Gene3D Transferase(Phosphotransferase) domain 1 3 319 - -
Lcy5g1821 460 SUPERFAMILY Protein kinase-like (PK-like) 8 332 IPR011009 -
Lcy5g1821 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1821 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g1821 460 CDD CIPK_C 323 437 - -
Lcy5g1821 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Lcy5g1821 460 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Lcy5g1821 460 FunFam Non-specific serine/threonine protein kinase 2 299 - -
Lcy5g1821 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy5g1821 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1821 460 CDD STKc_SnRK3 11 265 - -
Lcy5g1821 460 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g1821 460 Gene3D Kinase associated domain 1, KA1 320 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0158 Lcy-Chr1:1470580 Lcy5g1821 Lcy-Chr5:40981273 2.59E-160 dispersed
Lcy4g2024 Lcy-Chr4:46752930 Lcy5g1821 Lcy-Chr5:40981273 1.87E-184 dispersed
Lcy5g1821 Lcy-Chr5:40981273 Lcy8g1697 Lcy-Chr8:43542269 1.36E-198 dispersed
Lcy9g1957 Lcy-Chr9:44530573 Lcy5g1821 Lcy-Chr5:40981273 2.42E-25 dispersed
Lcy1g0262 Lcy-Chr1:2377264 Lcy5g1821 Lcy-Chr5:40981273 3.31E-184 transposed
Lcy1g0261 Lcy-Chr1:2355658 Lcy5g1821 Lcy-Chr5:40981273 9.48E-18 wgd
Lcy4g0694 Lcy-Chr4:8342090 Lcy5g1821 Lcy-Chr5:40981273 5.32E-18 wgd
Lcy5g1821 Lcy-Chr5:40981273 Lcy8g1560 Lcy-Chr8:42232234 9.87E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65944 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g1821 K07198 - csv:101206082 767.689